Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,537,998 – 10,538,105 |
Length | 107 |
Max. P | 0.738890 |
Location | 10,537,998 – 10,538,105 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 90.51 |
Mean single sequence MFE | -33.81 |
Consensus MFE | -26.96 |
Energy contribution | -25.86 |
Covariance contribution | -1.10 |
Combinations/Pair | 1.16 |
Mean z-score | -2.43 |
Structure conservation index | 0.80 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10537998 107 + 22224390 CUUAUAGCCAACCAACUGUAUCUAUGUAUGUACCAUACAUAUGUGUGUCAGGGGGUUUGGGUGUUGCUUCGAUGAUGGGCACCUUAAAAACACAUUAGUCGAAGCCC ...(((.((((((..(((.((.((((((((((...)))))))))).)))))..)).)))).))).((((((((((((...............))))).))))))).. ( -33.26) >DroSec_CAF1 64447 102 + 1 CUCAUAGCCAACCAACUGUAUCUAUAUA-----CAUACGUAUGUGUGUCAGGGGGGUUGGGUGUUGCUUCGAUGAUGGGCACCUUAAAAACACAUUAGUCGAAGCCC ...(((.((((((..(((.((.((((((-----(....))))))).)))))...)))))).))).((((((((((((...............))))).))))))).. ( -34.06) >DroSim_CAF1 68266 101 + 1 CUCAUAGCCAACCAACUGUAUCCAUGUA-----CAUACGUAUGUGUGUCAGGGGGGUUGGGUGUUGCUUCGAUGAUGGGCACUUUAAACACAUAUUAGUCGAGGC-C ...(((.((((((..(((.(..((((((-----(....)))))))..))))...)))))).))).((((((((.(((.............)))....))))))))-. ( -34.12) >consensus CUCAUAGCCAACCAACUGUAUCUAUGUA_____CAUACGUAUGUGUGUCAGGGGGGUUGGGUGUUGCUUCGAUGAUGGGCACCUUAAAAACACAUUAGUCGAAGCCC ...(((.((((((..((((((.(((((...........))))).))).)))..)).)))).))).((((((((((((...............))))).))))))).. (-26.96 = -25.86 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:19 2006