Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,537,465 – 10,537,566 |
Length | 101 |
Max. P | 0.551890 |
Location | 10,537,465 – 10,537,566 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 90.55 |
Mean single sequence MFE | -28.58 |
Consensus MFE | -24.54 |
Energy contribution | -24.02 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.15 |
Mean z-score | -1.26 |
Structure conservation index | 0.86 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10537465 101 - 22224390 ---------ACAACAUUUCUGGUUGUUUUUCGAGGGUAAUAAAACGUUUCGAAUUAACGUUUUGUUGCUAGACAAUUGGGACACAA-AGGGAACGACGUGCGGGUU--UGGCU ---------.(((...(((..(((((((......((((((((((((((.......)))))))))))))))))))))..)))(((..-.(....)...))).....)--))... ( -26.80) >DroSec_CAF1 63905 101 - 1 ---------ACAACAUUUCUGGUUGUUUUUCGAGGGUAAUAAAACGUUUCGAAUUAACGUUUUGUUGCUAGACAAUUGGGACACAA-AGGGAUCGACGUGUGGGUU--UGGCU ---------.(((...(((..(((((((......((((((((((((((.......)))))))))))))))))))))..)))((((.-..(......).))))...)--))... ( -27.10) >DroSim_CAF1 67726 101 - 1 ---------ACAACAUUUCUGGUUGUUUUUCGAGGGUAAUAAAACGUUUCGAAUUAACGUUUUGUUGCUAGACAAUUGGGACACAA-AGGGAUCGACGUGCGGGUU--UGGCU ---------.......(((..(((((((......((((((((((((((.......)))))))))))))))))))))..)))..(((-(....(((.....))).))--))... ( -25.50) >DroEre_CAF1 65389 101 - 1 ---------ACAACAUUUCUGCUUGUUUUCCGAGGGUAAUAAAACGUUUCGAAUUAACGUUUUGUUGCUAGACAAUUGGGGCACAA-AGGGAUCGACGUGCGGCGC--UGGCU ---------....((...((((.((((((((...((((((((((((((.......))))))))))))))......(((.....)))-.))))..)))).))))...--))... ( -26.70) >DroYak_CAF1 66237 113 - 1 UCAGCAUUUUCAACAUUUCUGCUUGUUUUCCGAGGGCAAUAAAACGUUUCGAAUUAACGUUUUGUUGCCAGACAAUUGGGACACAAAAGGGAUCGACGUGCGGGGCUUUGGCU ...((((..((...((..((..((((.((((((.((((((((((((((.......))))))))))))))......)))))).)))).))..)).)).))))..(((....))) ( -36.80) >consensus _________ACAACAUUUCUGGUUGUUUUUCGAGGGUAAUAAAACGUUUCGAAUUAACGUUUUGUUGCUAGACAAUUGGGACACAA_AGGGAUCGACGUGCGGGUU__UGGCU ..............((..((...(((.((((((.((((((((((((((.......))))))))))))))......)))))).)))..))..)).................... (-24.54 = -24.02 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:18 2006