Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,536,450 – 10,536,543 |
Length | 93 |
Max. P | 0.992551 |
Location | 10,536,450 – 10,536,543 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 73.48 |
Mean single sequence MFE | -25.48 |
Consensus MFE | -12.91 |
Energy contribution | -14.60 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.15 |
Mean z-score | -2.71 |
Structure conservation index | 0.51 |
SVM decision value | 2.34 |
SVM RNA-class probability | 0.992551 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10536450 93 + 22224390 UUUUAAAGGGAAUUUCAUAGCUGGUAACCCAAACUUUCCAGCAUUCCCAGACUG-------------------UUUCUGGAGCCUGACUCCGCUCCAGAACUCUGGAACUCU ......((((.........(((((.............)))))....(((((...-------------------.(((((((((........))))))))).)))))..)))) ( -30.62) >DroSec_CAF1 62878 103 + 1 UUUAAAAAGGAAAUUCAUAGCUGGUAAUCCAAACCAUCCAGCAUUCUUAGACUGUCUGUG-AUAUUUUCACAGUUUCUGGAGCCUGACUCCGCUCUAGAAUU--------CU ........((((.......(((((.............))))).............(((((-(.....)))))).(((((((((........)))))))))))--------)) ( -27.42) >DroSim_CAF1 66695 102 + 1 U-UAAAAAGGAAAUUCAUAGCUGGUAAUCCAAACCAUCCAGCAUUCUUAGACUGUCUCUG-AUAUUUUCACAGUUUCUGAACCCUGACUCCGCUCCAGAAUU--------CU .-......((((.(((..(((((((.......))))..(((..(((..(((((((....(-(.....)))))))))..)))..))).....)))...)))))--------)) ( -18.30) >DroYak_CAF1 65269 111 + 1 A-ACAAAGUGAAUUCCAUAGCUGGUAAUGCAAACUUUGCAGCAUUCUCAGACUUUCUCAGAAUAUUUUCACAGUUCCUGAAGGCUGAAUCCGGUCCAGAACUCUGGAACUCU .-.....(((((.......((((.(((........)))))))(((((.((.....)).)))))...)))))((((((....(((((....))))).((....)))))))).. ( -25.60) >consensus U_UAAAAAGGAAAUUCAUAGCUGGUAAUCCAAACCAUCCAGCAUUCUCAGACUGUCUCUG_AUAUUUUCACAGUUUCUGAAGCCUGACUCCGCUCCAGAACU________CU .......((((((......(((((.............)))))))))))..........................(((((((((........)))))))))............ (-12.91 = -14.60 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:17 2006