Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,530,959 – 10,531,056 |
Length | 97 |
Max. P | 0.981276 |
Location | 10,530,959 – 10,531,056 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 91.27 |
Mean single sequence MFE | -28.70 |
Consensus MFE | -21.98 |
Energy contribution | -22.18 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.99 |
Structure conservation index | 0.77 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844587 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10530959 97 + 22224390 GUGACGUUGACAUUUUGAGUGUCAUUUUGUUGGCUUGGCGUGACUGCCACAGC------UACAGCCACUUGCAACAUCCAAACUCCUGACUUACAUCGCCUUU ((((.((((((((.....))))))..((((((((((((((((.....))).))------)).)))))...))))..................)).)))).... ( -23.70) >DroSec_CAF1 62465 103 + 1 GUGACGUUGACAUUUUGAGUGUCAUUUUGUUGGCUUGGCGUGGCUGCCACAGCCACAGCCACAGCCACUUGCAACAUCCAAACUCCUGACUUACAUCGCCUUU ((((.((((((((.....))))))..((((((((((((((((((((...))))))).)))).)))))...))))..................)).)))).... ( -35.30) >DroSim_CAF1 66282 103 + 1 GUGACGUUGACAUUUUGAGUGUCAUUUUGUUGGCUUGGCGUGGCUGCCACAGCCACAGCCACAGCCACUUGCAACAUCCAAACUCCCGACUUACAUCGCCUUU ((((.((((....((((..(((.....(((((((((((((((((((...))))))).)))).)))))...))))))..))))....))))))))......... ( -35.50) >DroEre_CAF1 64001 91 + 1 GUGACGUUGACAUUUUGAGUGUCAUUUUGUUGGCUUGGCGUGGCUGCCA------------CAGCCACUUGCAACAUCCAAACUCCCGACUUACAGCGCCUUU ((((.((((((((.....)))))......((((....(((((((((...------------)))))))..)).....))))......)))))))......... ( -23.80) >DroYak_CAF1 64833 93 + 1 GUGACGUUGACAUUUUGAGUGUCAUUUUGUUGGCUUGGCGUGGCUGCCAC----------ACAGCCACUUGCAACAUCCAAACUCCUGACUUACAUCGCCUUA ((((.((((((((.....)))))).....((((....(((((((((....----------.)))))))..)).....))))...........)).)))).... ( -25.20) >consensus GUGACGUUGACAUUUUGAGUGUCAUUUUGUUGGCUUGGCGUGGCUGCCACAGC_______ACAGCCACUUGCAACAUCCAAACUCCUGACUUACAUCGCCUUU ((((.((((((((.....)))))......((((....(((((((((...............)))))))..)).....))))......)))))))......... (-21.98 = -22.18 + 0.20)
Location | 10,530,959 – 10,531,056 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 91.27 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -26.24 |
Energy contribution | -26.28 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.01 |
Structure conservation index | 0.84 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.981276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10530959 97 - 22224390 AAAGGCGAUGUAAGUCAGGAGUUUGGAUGUUGCAAGUGGCUGUA------GCUGUGGCAGUCACGCCAAGCCAACAAAAUGACACUCAAAAUGUCAACGUCAC ......(((((..((...(.((((((.........((((((((.------......)))))))).))))))).))....(((((.......)))))))))).. ( -26.00) >DroSec_CAF1 62465 103 - 1 AAAGGCGAUGUAAGUCAGGAGUUUGGAUGUUGCAAGUGGCUGUGGCUGUGGCUGUGGCAGCCACGCCAAGCCAACAAAAUGACACUCAAAAUGUCAACGUCAC ......(((((..(.((....((((..((((.....(((((.((((.(((((((...)))))))))))))))).......))))..)))).)).).))))).. ( -37.80) >DroSim_CAF1 66282 103 - 1 AAAGGCGAUGUAAGUCGGGAGUUUGGAUGUUGCAAGUGGCUGUGGCUGUGGCUGUGGCAGCCACGCCAAGCCAACAAAAUGACACUCAAAAUGUCAACGUCAC ...((((((....)))((.(.((((..((((.....(((((.((((.(((((((...)))))))))))))))).......))))..)))).).))...))).. ( -37.80) >DroEre_CAF1 64001 91 - 1 AAAGGCGCUGUAAGUCGGGAGUUUGGAUGUUGCAAGUGGCUG------------UGGCAGCCACGCCAAGCCAACAAAAUGACACUCAAAAUGUCAACGUCAC ...(((((((.....)))((.((((..((((.....(((((.------------((((......))))))))).......))))..))))...))..)))).. ( -25.90) >DroYak_CAF1 64833 93 - 1 UAAGGCGAUGUAAGUCAGGAGUUUGGAUGUUGCAAGUGGCUGU----------GUGGCAGCCACGCCAAGCCAACAAAAUGACACUCAAAAUGUCAACGUCAC ......(((((..((...(.((((((.........(((((((.----------....))))))).))))))).))....(((((.......)))))))))).. ( -28.10) >consensus AAAGGCGAUGUAAGUCAGGAGUUUGGAUGUUGCAAGUGGCUGU_______GCUGUGGCAGCCACGCCAAGCCAACAAAAUGACACUCAAAAUGUCAACGUCAC ...((((......((...(.((((((.........((((((((.............)))))))).))))))).))....(((((.......))))).)))).. (-26.24 = -26.28 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:16 2006