Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,526,928 – 10,527,040 |
Length | 112 |
Max. P | 0.651852 |
Location | 10,526,928 – 10,527,040 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.58 |
Mean single sequence MFE | -24.22 |
Consensus MFE | -6.90 |
Energy contribution | -8.10 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.39 |
Mean z-score | -1.74 |
Structure conservation index | 0.28 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10526928 112 + 22224390 ------GGUCUUAAUUUACUUAAUUGACACUGCUGUCCACCUCCAUUUUGUAAUCAGAAAUAAAG--CUAUACGAACUGCAGAGGAGGGAGACUUUUUCAUGUAUGUAAACUCAUUCAAU ------(((.((((((.....)))))).)))...(((..(((((.(((((....))))).....(--(..........))...)))))..))).......((.(((......))).)).. ( -21.20) >DroSec_CAF1 58054 118 + 1 CUUUGUUUUCCUAAUUUACUUAAUUGACACUGCUGUCCCCCUCUAUUUUGUAAUCAGAAAUAAAG--CUAUAAGAACAGCAGAGGAGGGAGACUUUUUCAUUUAUAUAAACUCAUUCAAC ....((((((((.............((((....))))..(((((.(((((....))))).....(--((........))))))))))))))))........................... ( -22.30) >DroSim_CAF1 61746 118 + 1 CUUUGUUUUCUUAAUUUACUUAAUUGACACUGCUCUUCCCCUCUAUUUUGUAAUCAGAAAUAAAG--CUAUAAGAACAGCAGAGGAGGGAGACUUUUUCAUUUAUAUAAACUCAUUCAAU ..............((((..(((.(((....(.(((((((((((.(((((....))))).....(--((........)))))))).)))))))....))).)))..)))).......... ( -23.00) >DroEre_CAF1 59993 120 + 1 CUUUGUUUUCUUAAUUUAGCUAAUUGAUUUCGCUCACCCCCUCAGUUUUGUAAACAGAAACUCAGUUCAGUAGAAACUGCAGAGGAGGGGGAAUCUAGCUUUUAUGAAAACUCCUUCAAG ....((((((.(((...(((((..(((......)))(((((((..(((((....))))).(((....((((....))))..))))))))))....))))).))).))))))......... ( -33.90) >DroYak_CAF1 60629 106 + 1 CUUUGUUUUCUGAUUUUACCUAAUCGCCUUUACUGUGCGUCUGAAUUUUGCAAUCAGAAAUAAAG--CAAUAAGAAUUGCUGAGUUGGGAGACU------UUU------UCUCUUUUAAU ....((((((..((((........((((......).)))(((((.........))))).....((--((((....))))))))))..)))))).------...------........... ( -20.70) >consensus CUUUGUUUUCUUAAUUUACUUAAUUGACACUGCUGUCCCCCUCAAUUUUGUAAUCAGAAAUAAAG__CUAUAAGAACUGCAGAGGAGGGAGACUUUUUCAUUUAUAUAAACUCAUUCAAU ..................................(((.((((((..((((((.......(((......)))......)))))))))))).)))........................... ( -6.90 = -8.10 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:12 2006