Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,523,904 – 10,524,002 |
Length | 98 |
Max. P | 0.893313 |
Location | 10,523,904 – 10,524,002 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.87 |
Mean single sequence MFE | -26.56 |
Consensus MFE | -20.24 |
Energy contribution | -20.60 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -1.69 |
Structure conservation index | 0.76 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10523904 98 + 22224390 -------------------CCUGUGUCCUGUAACUGGAGUCCAGGACACUGGACAUAUGCUGGCCGUCUUAUGCUGCUGCAGCUGUACAAAAAAAAAA---AAAAAAAAAUGAAAAUACG -------------------((.((((((((..((....)).)))))))).))(((..(((.(((.((.....)).))))))..)))............---................... ( -23.20) >DroSec_CAF1 55236 92 + 1 -------------------CCUGUGUCCUGUUACUGGAGUCCAGGACACUGGACAUAUGCUGGCCGUCUUAUGCUGCUGCAGCUGUACAA--AA-------AAAAAAGAAGGAAAAUACG -------------------(((((((((((..((....)).))))))))((.(((..(((.(((.((.....)).))))))..))).)).--..-------........)))........ ( -23.90) >DroSim_CAF1 58830 94 + 1 -------------------CCUGUGUCCUGUAACUGGAGUCCAGGACACUGGACAUAUGCUGGCCGUCUUAUGCUGCUGCAGCUGUACAAUAAA-------AAAAAAAAAGGAAAAUACG -------------------(((((((((((..((....)).))))))))((.(((..(((.(((.((.....)).))))))..))).)).....-------........)))........ ( -23.60) >DroEre_CAF1 57283 88 + 1 -------------------CCUAUGUCCUGUAACUGGAGUCCAGGACACUGGACAUAUGCUGGCCGUCUUAUGCUGCUGUAGCUGUAAAAAAAGAAG-------------GGAAAAUACA -------------------..(((((((.((..((((...))))...)).)))))))......((.((((.(((.((....)).)))....)))).)-------------)......... ( -21.30) >DroYak_CAF1 57638 120 + 1 UGUAACUGUAGUCCAGUGUCCAGUGUCCUGUAACUGUUGUCCAGGACACUGGACAUAUGCCAGCCGUCUUAUGCUGCAGUAGCUGCAAAAAAAGAAAGAAAAAAAAUGAAGGAAAAUGCG .......(((.(((.(((((((((((((((..((....)).))))))))))))))).......(..((((.(..(((((...)))))..).))))..)............)))...))). ( -40.80) >consensus ___________________CCUGUGUCCUGUAACUGGAGUCCAGGACACUGGACAUAUGCUGGCCGUCUUAUGCUGCUGCAGCUGUACAAAAAAAA_____AAAAAAAAAGGAAAAUACG ...................((.((((((((..((....)).)))))))).))(((..(((.(((.((.....)).))))))..))).................................. (-20.24 = -20.60 + 0.36)
Location | 10,523,904 – 10,524,002 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.87 |
Mean single sequence MFE | -25.00 |
Consensus MFE | -20.82 |
Energy contribution | -20.66 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.15 |
Mean z-score | -1.36 |
Structure conservation index | 0.83 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.822115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10523904 98 - 22224390 CGUAUUUUCAUUUUUUUUU---UUUUUUUUUUGUACAGCUGCAGCAGCAUAAGACGGCCAGCAUAUGUCCAGUGUCCUGGACUCCAGUUACAGGACACAGG------------------- .((((..............---..........)))).((((...)))).......((.((.....)).)).(((((((((((....))).))))))))...------------------- ( -22.16) >DroSec_CAF1 55236 92 - 1 CGUAUUUUCCUUCUUUUUU-------UU--UUGUACAGCUGCAGCAGCAUAAGACGGCCAGCAUAUGUCCAGUGUCCUGGACUCCAGUAACAGGACACAGG------------------- (((((...((.((((....-------..--(((((....)))))......)))).)).....))))).((.((((((((...........)))))))).))------------------- ( -21.30) >DroSim_CAF1 58830 94 - 1 CGUAUUUUCCUUUUUUUUU-------UUUAUUGUACAGCUGCAGCAGCAUAAGACGGCCAGCAUAUGUCCAGUGUCCUGGACUCCAGUUACAGGACACAGG------------------- ........(((........-------.....((.(((..(((.((..(....)...))..)))..))).))(((((((((((....))).)))))))))))------------------- ( -22.60) >DroEre_CAF1 57283 88 - 1 UGUAUUUUCC-------------CUUCUUUUUUUACAGCUACAGCAGCAUAAGACGGCCAGCAUAUGUCCAGUGUCCUGGACUCCAGUUACAGGACAUAGG------------------- .........(-------------(.((((........((....)).....)))).))...........((.(((((((((((....))).)))))))).))------------------- ( -18.72) >DroYak_CAF1 57638 120 - 1 CGCAUUUUCCUUCAUUUUUUUUCUUUCUUUUUUUGCAGCUACUGCAGCAUAAGACGGCUGGCAUAUGUCCAGUGUCCUGGACAACAGUUACAGGACACUGGACACUGGACUACAGUUACA .........................((((...((((((...))))))...)))).(((((.(...(((((((((((((((((....))).))))))))))))))...)....)))))... ( -40.20) >consensus CGUAUUUUCCUUCUUUUUU_____UUUUUUUUGUACAGCUGCAGCAGCAUAAGACGGCCAGCAUAUGUCCAGUGUCCUGGACUCCAGUUACAGGACACAGG___________________ .....................................((((..((..(....)...))))))......((.(((((((((((....))).)))))))).))................... (-20.82 = -20.66 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:07 2006