Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,523,118 – 10,523,216 |
Length | 98 |
Max. P | 0.500000 |
Location | 10,523,118 – 10,523,216 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 91.14 |
Mean single sequence MFE | -17.12 |
Consensus MFE | -14.07 |
Energy contribution | -14.82 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.39 |
Structure conservation index | 0.82 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10523118 98 - 22224390 CCAUUCCCCCGCAGUCCAUCUCUGACCUCAAAACUAAAUCGAAACUUGCAGUUGCAGGACAAUCUCGGCGUUAUCCUUCCGCUGUUGUUCC--UUCCUCU .............((((.....((....))................(((....)))))))(((..(((((.........)))))..)))..--....... ( -13.60) >DroSec_CAF1 54490 100 - 1 CCAUUCCCCCACAGUCCAUCUCUGACCUCAAAACUAAAUCGAAACUUGCAGUGGCAGGACAAUCUCGGCGUUAUCCUUCCGCUGUUGUUCCUCUUCCUCU ...........(((.......)))................(((....(((((((.((((.(((......))).)))).)))))))..))).......... ( -19.10) >DroSim_CAF1 58103 100 - 1 CCAUUCCCCCACAGUCCAUCUCUGACCUCAAAACUAAAUCGAAACUUGCAGUGGCAGGACAAUCUCGGCGUUAUCCUUCCUCUGUUGUUCCUCUUCCUCU ...........(((.......)))................(((....((((.((.((((.(((......))).)))).)).))))..))).......... ( -15.50) >DroEre_CAF1 56464 92 - 1 ----UUCCAG--UGUCCAUCUCUGACCUCAAAACUAAAUCGAAACUUGCAGUUGCAGGACAAUCUCGCCGUUAUCCUGCCGCUGUUGUUCC--UUCCUCU ----...(((--.(.....).)))................(((....(((((.((((((.(((......))).)))))).)))))..))).--....... ( -20.30) >consensus CCAUUCCCCCACAGUCCAUCUCUGACCUCAAAACUAAAUCGAAACUUGCAGUGGCAGGACAAUCUCGGCGUUAUCCUUCCGCUGUUGUUCC__UUCCUCU .............(((.......)))..............(((....(((((((.((((.(((......))).)))).)))))))..))).......... (-14.07 = -14.82 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:05 2006