Locus 3960

Sequence ID X_DroMel_CAF1
Location 10,518,307 – 10,518,427
Length 120
Max. P 0.994386
window6506

overview

Window 6

Location 10,518,307 – 10,518,427
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.00
Mean single sequence MFE -45.90
Consensus MFE -41.96
Energy contribution -42.20
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.86
Structure conservation index 0.91
SVM decision value 2.47
SVM RNA-class probability 0.994386
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10518307 120 - 22224390
CCUGGCCUGGUGGUCAGUGUCUUUGUCCACGAGACGAUGAGGGAUUCGUUUUGUGAUCUAGUGCGCAACUCUAUGGAACGAAUGCAUCACCAGGCGGCCACUCACUCCAGCUAUGUCAAG
....((((((((((((.((((((.......)))))).))).(.((((((((..((....(((.....))).))..)))))))).).)))))))))(((...........)))........ ( -37.60)
>DroSec_CAF1 49842 120 - 1
CCUGGCCUGGUGGUCAGUGUCUUUGUCCACGAGACGAUGAGGGAUUCGUUUUGUGAUCAAGUGCGCAACUCCAUGGAACGAAUGCACCACCAGGCGGCCACUCACUCCACCUAUGUGAAG
....((((((((((((((((.((((..((((((((((........))))))))))..)))).))))...((....)).....)).))))))))))......((((.........)))).. ( -46.60)
>DroSim_CAF1 53366 120 - 1
CCUGGCCUGGUGGUCAGUGUCUUUGUCCACGAGACGAUGAGGGAUUCGUUUUGUGAUCAAGUGCGCAACUCCAUGGAACGAAUGCACCACCAGGCGGCCACUCACUCCACCUAUGUGAAG
....((((((((((((((((.((((..((((((((((........))))))))))..)))).))))...((....)).....)).))))))))))......((((.........)))).. ( -46.60)
>DroEre_CAF1 51788 120 - 1
CCUGGCCUGGUGGUCAGUGUGUUUGUCCACGAGACGAUGAGGAAUUCGUUUUGUGAUCAAGUGCGCAGCUCCAUGGAACCGAUGUACCACCAGUCGGCCACCCACGCCAGCCAUUUGAGG
.(((((..(((((((.(((..((((..((((((((((........))))))))))..))))..))).(((...(((.((....)).)))..))).)))))))...))))).......... ( -48.20)
>DroYak_CAF1 51261 120 - 1
GCUGGCCUGGUGGUCAGUGUGUUUGUCCACGAGACGAUGAGGGAUUCGUUUUGUGACCAAGUGCGCAGCUCCAUGGAACCGAUGCACCACCAGGCGGCCAACCACGCCAACUAUGUGAAG
....(((((((((((((((..((((..((((((((((........))))))))))..))))..)))...((....)).....)).))))))))))(((.......)))............ ( -50.50)
>consensus
CCUGGCCUGGUGGUCAGUGUCUUUGUCCACGAGACGAUGAGGGAUUCGUUUUGUGAUCAAGUGCGCAACUCCAUGGAACGAAUGCACCACCAGGCGGCCACUCACUCCACCUAUGUGAAG
....(((((((((((((((..((((..((((((((((........))))))))))..))))..)))...((....)).....)).))))))))))((.........))............ (-41.96 = -42.20 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:50 2006