Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,170,586 – 1,170,701 |
Length | 115 |
Max. P | 0.852680 |
Location | 1,170,586 – 1,170,701 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.68 |
Mean single sequence MFE | -35.80 |
Consensus MFE | -20.28 |
Energy contribution | -23.92 |
Covariance contribution | 3.64 |
Combinations/Pair | 1.11 |
Mean z-score | -2.22 |
Structure conservation index | 0.57 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852680 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1170586 115 + 22224390 AUCUUUAACUCGCUAUGGCAUGGCCAAGUUUAAUGGCUUGGCUAUGUGCCAUUGCACAGGGCCU-----CCCCUUGACGCUCCUCAAUUCGCCAUUCGCCGCUUGGAAGCGGGGCUUUCA ...........((.((((((((((((((((....)))))))))..))))))).)).(((((...-----..)))))..(((((.......((.....)).(((....))))))))..... ( -41.50) >DroSec_CAF1 6600 108 + 1 AUCUUUAACUCGCUAUGGCAUGGCCAAGUUUAAUGGCUUGGCUAUGUGCCAUUGCACAGGGCCU-----CCCCUUGACGCUCCUCGCUUCG-------CCGCUUUGAAGCGGGGCUUUCA ...........((.((((((((((((((((....)))))))))..))))))).)).(((((...-----..))))).....((((((((((-------......))))))))))...... ( -45.60) >DroSim_CAF1 7038 105 + 1 AUCUUUAACUCGCUAUGGCAUGGCCAAGUUUAAUGGCUUGGCUAUGUGCCAUUGCACAG-GCCU-----CCUCUUGACGCUC-UCGAUUCG--------CGCUUCGAAGCGGGGCUUUCA ...........((.((((((((((((((((....)))))))))..))))))).))..((-((((-----(((.((((.((.(-.......)--------.)).)))))).)))))))... ( -40.50) >DroEre_CAF1 5749 97 + 1 AUCUUUAACUCGC------AUGUCCAAGUUGAAUGG-----UUAUGUGCCAUUGCACAGGGUUU-----CCCCUUGAAGCUCCACGAUUCG-------CCGCCUUGUAGCGGGGCUUUCA .............------..((((.....((((.(-----(..(((((....)))))((((((-----(.....))))).)))).)))).-------.(((......)))))))..... ( -25.10) >DroYak_CAF1 8514 103 + 1 AUCUUUAACUCGCU-----GUGUCCAACUAUAAUGG-----UUAUGUGCCAUUGCACAGGGUUUCCUUUCCCCUUGAAGCUCCGCGAUUCG-------CCGCCUUGUGCCGGGGCUUUCA ..............-----..((((......(((((-----(.....))))))(((((((((...((((......))))....(((...))-------).)))))))))..))))..... ( -26.30) >consensus AUCUUUAACUCGCUAUGGCAUGGCCAAGUUUAAUGGCUUGGCUAUGUGCCAUUGCACAGGGCCU_____CCCCUUGACGCUCCUCGAUUCG_______CCGCUUUGAAGCGGGGCUUUCA .................(((((((((((((....)))))))))))))(((...((.(((((..........)))))..))..................(((((....))))))))..... (-20.28 = -23.92 + 3.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:27 2006