Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,514,531 – 10,514,630 |
Length | 99 |
Max. P | 0.998012 |
Location | 10,514,531 – 10,514,630 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 88.52 |
Mean single sequence MFE | -36.65 |
Consensus MFE | -34.06 |
Energy contribution | -34.38 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -3.09 |
Structure conservation index | 0.93 |
SVM decision value | 2.98 |
SVM RNA-class probability | 0.998012 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10514531 99 + 22224390 UGUUGUUGCCGCUGCCAUUAUCCUUGUAGUGUUUCCGUACAACAGUGGCAACAGCCACCUGGCCGGUGGCAUGGGAAAGUUCCCAUCUCCC--------------AUUUCCCU ...(((((((((((.........(((((.((....))))))))))))))))))((((((.....))))))((((((....)))))).....--------------........ ( -37.00) >DroSec_CAF1 45832 99 + 1 UGUUGUUGCCGCUGCCAUUAUCCUUGUAGUGUUUCCGUACAACAGUGGCAACAGCCACCUGGCCGGUGGCAUGGGAAAGUUCCCAUCUUCC--------------AUUUCCCU ...(((((((((((.........(((((.((....))))))))))))))))))((((((.....))))))((((((....)))))).....--------------........ ( -37.00) >DroSim_CAF1 49169 99 + 1 UGUUGUUGCCGCUGCCAUUAUCCUUGUAGUGUUUCCGUACAACAGUGGCAACAGCCACCUGGCCGGUGGCAUGGGAAAGUUCCCAUCUUCC--------------AUUUCCCU ...(((((((((((.........(((((.((....))))))))))))))))))((((((.....))))))((((((....)))))).....--------------........ ( -37.00) >DroEre_CAF1 46499 112 + 1 AGUUGUUGCCGCUGCCAUUAUCCUUGUAGUGUUUCCGUACAACAGUGGCAACAGC-ACCUGGCCGGCGGCAUGGGAAGGUUCCCGGUUCCCAUAUCCCAUCACCCAUCUCCCC .(((((((((((((.........(((((.((....))))))))))))))))))))-........((.(..((((((.((...))...))))))..)))............... ( -35.60) >consensus UGUUGUUGCCGCUGCCAUUAUCCUUGUAGUGUUUCCGUACAACAGUGGCAACAGCCACCUGGCCGGUGGCAUGGGAAAGUUCCCAUCUCCC______________AUUUCCCU ...(((((((((((.........(((((.((....))))))))))))))))))((((((.....)))))).(((((....)))))............................ (-34.06 = -34.38 + 0.31)
Location | 10,514,531 – 10,514,630 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 88.52 |
Mean single sequence MFE | -41.00 |
Consensus MFE | -36.99 |
Energy contribution | -37.55 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -3.56 |
Structure conservation index | 0.90 |
SVM decision value | 2.95 |
SVM RNA-class probability | 0.997874 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10514531 99 - 22224390 AGGGAAAU--------------GGGAGAUGGGAACUUUCCCAUGCCACCGGCCAGGUGGCUGUUGCCACUGUUGUACGGAAACACUACAAGGAUAAUGGCAGCGGCAACAACA ......((--------------((((((.(....)))))))))((((((.....))))))(((((((.((((..(..(....).((....))...)..)))).)))))))... ( -43.60) >DroSec_CAF1 45832 99 - 1 AGGGAAAU--------------GGAAGAUGGGAACUUUCCCAUGCCACCGGCCAGGUGGCUGUUGCCACUGUUGUACGGAAACACUACAAGGAUAAUGGCAGCGGCAACAACA ........--------------.....((((((....))))))((((((.....))))))(((((((.((((..(..(....).((....))...)..)))).)))))))... ( -39.90) >DroSim_CAF1 49169 99 - 1 AGGGAAAU--------------GGAAGAUGGGAACUUUCCCAUGCCACCGGCCAGGUGGCUGUUGCCACUGUUGUACGGAAACACUACAAGGAUAAUGGCAGCGGCAACAACA ........--------------.....((((((....))))))((((((.....))))))(((((((.((((..(..(....).((....))...)..)))).)))))))... ( -39.90) >DroEre_CAF1 46499 112 - 1 GGGGAGAUGGGUGAUGGGAUAUGGGAACCGGGAACCUUCCCAUGCCGCCGGCCAGGU-GCUGUUGCCACUGUUGUACGGAAACACUACAAGGAUAAUGGCAGCGGCAACAACU .......(((.((.(((..((((((((..(....).))))))))))).)).)))(.(-((((((((((.(.(((((.(....)..))))).)....))))))))))).).... ( -40.60) >consensus AGGGAAAU______________GGAAGAUGGGAACUUUCCCAUGCCACCGGCCAGGUGGCUGUUGCCACUGUUGUACGGAAACACUACAAGGAUAAUGGCAGCGGCAACAACA ...........................((((((....))))))((((((.....))))))(((((((.((((..(..(....).((....))...)..)))).)))))))... (-36.99 = -37.55 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:38 2006