Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,512,923 – 10,513,027 |
Length | 104 |
Max. P | 0.882728 |
Location | 10,512,923 – 10,513,027 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 92.44 |
Mean single sequence MFE | -35.76 |
Consensus MFE | -31.62 |
Energy contribution | -31.98 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.03 |
Mean z-score | -1.45 |
Structure conservation index | 0.88 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10512923 104 - 22224390 GUCUCGUGUUUGUUGCUGCGGCGGGAAGGCCAUAAUAGUUACUGGGAU-------UCCGGCACAAUACGCCGAACACUUUUGGAUCUCCAAA----CCAGCAGCCUUGAGCACUC .....(((((((..((((((((......)))...........(((...-------..((((.......))))......(((((....)))))----))))))))..))))))).. ( -35.10) >DroSec_CAF1 44270 104 - 1 GUCUCGUGUUUGUUGCUGCGGCGGGAAGGCCAUAAUAGUUACUGGGAU-------UCCGGCACAACACGCCGAACACUUUUGGAUCUCCAAA----CCAGCAGCCUUGAGCACUC .....(((((((..(((((((((((((..(((..........)))..)-------)))(......).)))).......(((((....)))))----...)))))..))))))).. ( -35.40) >DroSim_CAF1 47617 104 - 1 GUCUCGUGUUUGUUGCUGCGGCGGGAAGGCCAUAAUAGUUACUGGGAU-------UCCGGCACAACACGCCGAACACUUUUGGAUCUCCAAA----CCAGCAGCCUUGAGCACUC .....(((((((..(((((((((((((..(((..........)))..)-------)))(......).)))).......(((((....)))))----...)))))..))))))).. ( -35.40) >DroEre_CAF1 44984 104 - 1 GUCUAGUGUUUGUUGCUGCGGCGGGAAGGACAUAAUAGUUACUGGGAU-------UCCGGCACAACACGCCGAACACUUUUGGAUCUCCAAG----CCAGCAGCCUUGAGCACUC ....((((((((..((((((((......(((......)))..((((((-------((((((.......)))).........))))).))).)----)).)))))..)))))))). ( -34.60) >DroYak_CAF1 46004 115 - 1 GUCUCGUGUUUGUUGCUGCGGCGGAAAGGCCAUAAUAGUUGCUUGGAUUCCGGAUUCCGGCACAACACACCGAACAUUUUUGGAUCUCCAAGUGCUCCAGCAGCCUUGAGCACUC .....(((((((..((((((((......))).........(((((((..((((...)))).........(((((....)))))...)))))))......)))))..))))))).. ( -38.30) >consensus GUCUCGUGUUUGUUGCUGCGGCGGGAAGGCCAUAAUAGUUACUGGGAU_______UCCGGCACAACACGCCGAACACUUUUGGAUCUCCAAA____CCAGCAGCCUUGAGCACUC .....(((((((..(((((((((.....(((....(((...)))(((........))))))......)))).......(((((....))))).......)))))..))))))).. (-31.62 = -31.98 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:36 2006