Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,512,759 – 10,512,873 |
Length | 114 |
Max. P | 0.890478 |
Location | 10,512,759 – 10,512,873 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 90.42 |
Mean single sequence MFE | -28.01 |
Consensus MFE | -23.15 |
Energy contribution | -24.55 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.83 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890478 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10512759 114 - 22224390 AUUUAAAAUGCCAUAAAUUAAGAGACAACAACUGACGAUGGCGCCGAUGCCGAGAUAGAGAGAG--AGGUGGGUUGGUUGGGGCCAUUGCAGUUUUCACUAUUAAAAUGCAUUAA-A ......(((((......((((.((.....(((((.(((((((.((((((((.(..(........--)..).)))..))))).))))))))))))....)).))))...)))))..-. ( -29.10) >DroSec_CAF1 44112 108 - 1 AUUUAAAAUGCCAUAAAUUAAGAGACAACAACUGACGAUGGCGCCGAUGCCGAGAUAGGGAGAG--------AGGGGUUAAGGCCAUUGCAGUUUCCACUAUUAAAAUGCAUUAA-A ......(((((......((((.((.....(((((.(((((((...(((.((.............--------.)).)))...))))))))))))....)).))))...)))))..-. ( -22.44) >DroSim_CAF1 47451 116 - 1 AUUUAAAAUGCCAUAAAUUAAGAGACAACAACUGACGAUGGCGCCGAUGCCGAGAUAGAGAGAGAGAGGGGGAGGGGUUAAGGCCAUUGCAGUUUCCACUAUUAAAAUGCAUUAA-A ......(((((......((((.((.....(((((.((((((((((..(.((..................)).)..)))....))))))))))))....)).))))...)))))..-. ( -22.77) >DroEre_CAF1 44806 114 - 1 AUUUAAAAUGCCAUAAAUUAAGAGACAACAACUGACGAUGGCGCCGAUGCCGAGAUAGAGGUAG--AGUGGUUGGGGUUGGGGCCAUUGCAGUUUCCACUAUUAAAAUGCAUUUA-A .....((((((......((((.((.....(((((.(((((((.(((((.((((...........--.....)))).))))).))))))))))))....)).))))...)))))).-. ( -32.99) >DroYak_CAF1 45817 109 - 1 AUUUAAAAUGCCAUAAAUUAAGAGACAACAACUGACGAUGGCGCCGAUGCCGAGAUAAAGAGAG--AG------GUGUUGGGGCCAUUGCAGUUUCCACUAUUAAAAUGCAUUAAAA ......(((((......((((.((.....(((((.(((((((.((((((((.............--.)------))))))).))))))))))))....)).))))...))))).... ( -32.74) >consensus AUUUAAAAUGCCAUAAAUUAAGAGACAACAACUGACGAUGGCGCCGAUGCCGAGAUAGAGAGAG__AG__G_AGGGGUUGGGGCCAUUGCAGUUUCCACUAUUAAAAUGCAUUAA_A ......(((((......((((.((.....(((((.(((((((.(((((.((......................)).))))).))))))))))))....)).))))...))))).... (-23.15 = -24.55 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:35 2006