Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,512,570 – 10,512,660 |
Length | 90 |
Max. P | 0.644932 |
Location | 10,512,570 – 10,512,660 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 86.14 |
Mean single sequence MFE | -23.51 |
Consensus MFE | -15.66 |
Energy contribution | -15.66 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.80 |
Structure conservation index | 0.67 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644932 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10512570 90 + 22224390 UAGCAGAGGGGGUUG----GAAGUGGUAAAGUUGACCU--CCCAGCUCUUUGUGCUUAUU----------------UUUUCAAAUUUAUUUUUUUAAUGCAUGCAUUCAAGC .((((.(((((((((----(....(((.......))).--.)))))))))).))))....----------------...............(((.((((....)))).))). ( -21.90) >DroSec_CAF1 43934 90 + 1 UAGCAAAGGGGGUUG----GGAGUGGUAAAGUCGACCU--CCCAGCUCUUUGUGCUUAUU----------------UUUUCAAAUUUAUUUUUUUAAUGCAUGCAUUCAAGC .((((.(((((((((----(((((.(......).).))--))))))))))).))))....----------------...............(((.((((....)))).))). ( -25.20) >DroSim_CAF1 47271 90 + 1 UAGCAAAGGGGGUUG----GGAGUGGUAAAGUCGACCU--CCCAGCUCUUUGUGCUUAUU----------------UUUUCAAAUUUAUUUUUUUAAUGCAUGCAUUCAAGC .((((.(((((((((----(((((.(......).).))--))))))))))).))))....----------------...............(((.((((....)))).))). ( -25.20) >DroYak_CAF1 45605 112 + 1 UAGCAGAGGGGGUUGCUUGCUAGUGGUAAAGUCGACCUUCCCCAGCUCUUUGUGCUUAUUUUUGCAUUUUUUCAUUUUUUCAAAUUUAUUUUUUUAAUGCAUGCAUUUAAGC ..((((((((((((((((((.....)).))).)))))........))))))))(((((....((((((...........................))))))......))))) ( -21.73) >consensus UAGCAAAGGGGGUUG____GGAGUGGUAAAGUCGACCU__CCCAGCUCUUUGUGCUUAUU________________UUUUCAAAUUUAUUUUUUUAAUGCAUGCAUUCAAGC .((((.(((((((((.........(((.......))).....))))))))).))))...................................(((.((((....)))).))). (-15.66 = -15.66 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:34 2006