Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,509,820 – 10,509,913 |
Length | 93 |
Max. P | 0.685281 |
Location | 10,509,820 – 10,509,913 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 78.77 |
Mean single sequence MFE | -28.53 |
Consensus MFE | -8.30 |
Energy contribution | -8.98 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.17 |
Mean z-score | -2.03 |
Structure conservation index | 0.29 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685281 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10509820 93 - 22224390 AUUGGCCAG--------GCCAAACUCAACCGCAUUAUU-UAGCUGCAUUUUAAAGGCC--AAUGACAAUUGUGCUAAUGGUCUGGC------------UGGCUUUUUGGCUUACAA ...((((((--------((((.........(((.....-....)))........((((--(((....)))).)))..)))))))))------------)((((....))))..... ( -28.20) >DroSec_CAF1 41189 93 - 1 AUUGGCCAG--------GCCAAGCUCAACCGCAUUAUU-UAGCUGCAUUUUAAAGGCC--AAUGACAAUUGUGCUAAUGGUCUGGC------------UGGCUUUUUGGCUUACAA ...((((((--------((((((((.((........))-.))))..........((((--(((....)))).)))..)))))))))------------)((((....))))..... ( -28.60) >DroSim_CAF1 44486 93 - 1 AUUGGCCAG--------GCCAAGCUCAACCGCAUUAUU-UAGCUGCAUUUUAAAGGCC--AAUGACAAUUGUGCUAAUGGUCUGGC------------UGGCUUUUUGGCUUACAA ...((((((--------((((((((.((........))-.))))..........((((--(((....)))).)))..)))))))))------------)((((....))))..... ( -28.60) >DroEre_CAF1 41993 93 - 1 AUUGGCCAG--------GCCAAGCUCAACCGCAUUAUU-UAGCUGCAUUUUAAAGGCC--AAUGACAACUGCGCUAAUGGUCUGGC------------UUGUUUUUUGGCUUACAA ...((((((--------((((.((......)).....(-((((.(((...........--.........)))))))))))))))))------------)................. ( -24.65) >DroAna_CAF1 46287 116 - 1 AUUGGCCAAAGCCAAAGCCAAAGCACAACGAGAGUAUUUUGGAUGAAUUUUUAAGGUCACACUGACAAUUUGGCUAAUGGUUGGGAGUGGACUUGGUCCAGAUUUUGGGGUUCCCC .(..((((.(((((((.((((((.((.......)).)))))).............(((.....)))..)))))))..))))..)...(((((...)))))......(((....))) ( -32.60) >consensus AUUGGCCAG________GCCAAGCUCAACCGCAUUAUU_UAGCUGCAUUUUAAAGGCC__AAUGACAAUUGUGCUAAUGGUCUGGC____________UGGCUUUUUGGCUUACAA ....(((((........(((((((.(((...((((......(((..........)))...))))....))).)))..)))))))))....................((.....)). ( -8.30 = -8.98 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:33 2006