Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,169,503 – 1,169,622 |
Length | 119 |
Max. P | 0.500000 |
Location | 1,169,503 – 1,169,622 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.55 |
Mean single sequence MFE | -26.10 |
Consensus MFE | -17.61 |
Energy contribution | -18.81 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.67 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1169503 119 + 22224390 GCGCGGGGACCAAAACAAAAUC-AAACCCAAAUGCUUUCGAUUUCUAUUUAAAUAUGCAAAUCGACCAAAGACAGGCAGCACAGCAGCCAACCAAGCCAUUCGAUGGCAUCGCAUCUCAU ..((((((..............-.........((((((((((((.(((......))).)))))))...))).))(((.((...)).)))..))..(((((...))))).))))....... ( -25.10) >DroSec_CAF1 5490 118 + 1 GCGCGGGGACGAAAACA-AAUC-AAACCCAAAUGCUUUCGAUUUCUAUUUAAAUAUGCAAAUCGACCAAAGACAGGCAGCACAGCGGCCAACGAAGCCAUUCGAUGGCAUCGCAUCUCAU (.(((((...((.....-..))-...)))...((((((((((((.(((......))).)))))))........))))))).).(((((((.((((....)))).))))..)))....... ( -30.10) >DroSim_CAF1 6008 118 + 1 GCGCGGGGACCAAAACA-AAUC-AAACCCAAAUGCUUUCGAUUUCUAUUUAAAUAUGCAAAUCGACCAAAGACAGGCAGCACAGCGGCCAACGAAGCCAUUCGAUGGCAUCGCAUCUCAU (.(((((..........-....-...)))...((((((((((((.(((......))).)))))))........))))))).).(((((((.((((....)))).))))..)))....... ( -29.53) >DroEre_CAF1 4637 113 + 1 GCGAGGGGACUACAACAAAAUUAAAACCCAAAUGCUUUCGAUUUCUAUUUAAAUAUGCAAAUCGACCAAAGACAGGCAGC-----AGCCAACCCAGCCAUUCGAUGGCUUCGCAUCUC-- (((((((.........................((((((((((((.(((......))).)))))))...))).))(((...-----.)))..)))((((((...)))))))))).....-- ( -28.70) >DroYak_CAF1 7433 100 + 1 GCGAGGGGACCACAACAAAAUCAAAACCCAAAUGCUUUCGAUUUCUAUUUAAAUAUGCAAAUCGACCAAAGACAGGCAGC-----AGCCAACGAAGCCA-------------CAUCUC-- ..((((((..................)))....(((((((((((.(((......))).))))))).........(((...-----.)))....))))..-------------...)))-- ( -17.07) >consensus GCGCGGGGACCAAAACAAAAUC_AAACCCAAAUGCUUUCGAUUUCUAUUUAAAUAUGCAAAUCGACCAAAGACAGGCAGCACAGCAGCCAACGAAGCCAUUCGAUGGCAUCGCAUCUCAU (((.(((...................)))...((((((((((((.(((......))).)))))))...))).))(((.........)))......((((.....))))..)))....... (-17.61 = -18.81 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:26 2006