Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,502,862 – 10,502,957 |
Length | 95 |
Max. P | 0.688979 |
Location | 10,502,862 – 10,502,957 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 90.15 |
Mean single sequence MFE | -24.90 |
Consensus MFE | -21.70 |
Energy contribution | -21.82 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.17 |
Mean z-score | -1.35 |
Structure conservation index | 0.87 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688979 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10502862 95 - 22224390 UUCUAGGUGGAAAAACAGGGCGGUGAGUAUUGUCAGGUAGCUUAGGUGCAUGAUUUCAAUGACUGA-UUUACUUUGUUCAUGUUUUUCAACCAAGU .....(((.(((((((((((((..(((((..(((((...((......)).((....))....))))-).)))))))))).)))))))).))).... ( -27.50) >DroSec_CAF1 33858 95 - 1 CUCUAGGUGGAAAAACAGGGCGGUGAGUAUUGUCAGGUAGCUUAAGUGCAUGAUUUCAAUGACUGA-UUUACUUUGUUCAUGUUUUUCAAUCAAGU .....(((.(((((((((((((..(((((..(((((...((......)).((....))....))))-).)))))))))).)))))))).))).... ( -24.90) >DroSim_CAF1 34321 95 - 1 CUCUAGGUGGAAAAACAGGGCGGUGAGUAUUGUCAGGUAGCUUAAGUGCAUGAUUUCAAUGACUGA-UUUACUUUGUUCAUGUUUUUCAAUCAAGU .....(((.(((((((((((((..(((((..(((((...((......)).((....))....))))-).)))))))))).)))))))).))).... ( -24.90) >DroEre_CAF1 35698 95 - 1 UGGUAGGUGGAAAAACAGGGCGGUGAGUAUUGCCAGGUAGCUCAGUUGCAUGAUUUCAAGGACUGA-UUUACUUUGUUUAUGUUUCUCAGCCGAGU .....(((.((.(((((.((((((....))))))((((((.((((((.(.((....)).)))))))-.))))))......))))).)).))).... ( -26.00) >DroYak_CAF1 37066 96 - 1 UUGUGGGUGGAAAAACAGGGCGGUGAGUAUUGGCAGGUAGCUCAAGUGCAUGAUUUCGAAGACUGACUUUACUUUGCUUAGGUUUUUCAAGCGAGU ((((...(((((((.(..((((..(((((..(.(((...((......)).((....))....))).)..)))))))))..).))))))).)))).. ( -21.20) >consensus UUCUAGGUGGAAAAACAGGGCGGUGAGUAUUGUCAGGUAGCUUAAGUGCAUGAUUUCAAUGACUGA_UUUACUUUGUUCAUGUUUUUCAACCAAGU .....(((.(((((((((((((..(((((...((((...((......)).((....))....))))...)))))))))).)))))))).))).... (-21.70 = -21.82 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:28 2006