Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,501,967 – 10,502,060 |
Length | 93 |
Max. P | 0.738876 |
Location | 10,501,967 – 10,502,060 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 99.57 |
Mean single sequence MFE | -24.12 |
Consensus MFE | -23.80 |
Energy contribution | -23.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.35 |
Structure conservation index | 0.99 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738876 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10501967 93 + 22224390 GCCGGGGUAACGAGGUCAUUUGGCAAUAUACCAACACAAACAAAAAUUAUGUUAUUGGUCAAUGUAUUUAUGAGUACGCCAGGCUCUGGCCCC ((((((((...(....)..(((((.....(((((....((((.......)))).)))))....(((((....))))))))))))))))))... ( -24.20) >DroSec_CAF1 33040 93 + 1 GCCGGGGUAACGAGGUCAUUUGGCAAUAUACCAACACAAACAAAAAUUAUGUUAUUGGUCAAUGUAUUUAUGAGUACGCCAGGCUCUGGCCCC ((((((((...(....)..(((((.....(((((....((((.......)))).)))))....(((((....))))))))))))))))))... ( -24.20) >DroSim_CAF1 33490 93 + 1 GCCGGGGUAACGAGGUCAUUUGGCAAUAUACCAACACAAACAAAAAUUAUGUUAUUGGUCAAUGUAUUUAUGAGUACGCCAGGCUCUGGCCCC ((((((((...(....)..(((((.....(((((....((((.......)))).)))))....(((((....))))))))))))))))))... ( -24.20) >DroEre_CAF1 34834 93 + 1 GCCGGGGUAACGAGGUCAUUUGGCAAUAUACCAACACAAACAAAAAUUAUGUUAUUGGUCAAUGUAUUUAUGAGUACGCCAGGCUCUGGCCCC ((((((((...(....)..(((((.....(((((....((((.......)))).)))))....(((((....))))))))))))))))))... ( -24.20) >DroYak_CAF1 36121 93 + 1 ACCGGGGUAACGAGGUCAUUUGGCAAUAUACCAACACAAACAAAAAUUAUGUUAUUGGUCAAUGUAUUUAUGAGUACGCCAGGCUCUGGCCCC ...(((((...(((....((((((.....(((((....((((.......)))).)))))....(((((....))))))))))))))..))))) ( -23.80) >consensus GCCGGGGUAACGAGGUCAUUUGGCAAUAUACCAACACAAACAAAAAUUAUGUUAUUGGUCAAUGUAUUUAUGAGUACGCCAGGCUCUGGCCCC ...(((((...(((....((((((.....(((((....((((.......)))).)))))....(((((....))))))))))))))..))))) (-23.80 = -23.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:27 2006