Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,501,118 – 10,501,221 |
Length | 103 |
Max. P | 0.863912 |
Location | 10,501,118 – 10,501,221 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 87.96 |
Mean single sequence MFE | -25.80 |
Consensus MFE | -18.50 |
Energy contribution | -20.38 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.12 |
Mean z-score | -2.35 |
Structure conservation index | 0.72 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10501118 103 + 22224390 AAAAUAAGGGCACUAUCAGCAUCGAAAGUAGAGUGGAGCCUAUUGAACGGCGAAAGGAAAUCGAAGGAAAUUCUACUUGGCUGACAAUUGAACUGACUUAAUU ......((..((...(((((.....(((((((((....(((.((((....(....)....)))))))..))))))))).)))))....))..))......... ( -25.70) >DroSec_CAF1 32181 103 + 1 AAAAUAAGGGCACUAUCAGCAUCGAAAGUAGAGUGGAGCCUAUUGAGCGGCGAAAGGAAAUCGAGGGAAAUUCUACUUGGCUGACAAUUGAACUGACUUAAUU ......((..((...(((((.....(((((((((....(((.((((....(....)....)))))))..))))))))).)))))....))..))......... ( -26.50) >DroSim_CAF1 32638 103 + 1 AAAAUAAGGGCACUAUCAGCAUCGAAAGUAGAGUGGAGCCUAUUGAGCGGCGAAAGGAAAUCGAGGGAAAUUCUACUUGGCUGACAAUUGAACUGGCUUAAUU ......((..((...(((((.....(((((((((....(((.((((....(....)....)))))))..))))))))).)))))....))..))......... ( -26.50) >DroEre_CAF1 33957 103 + 1 AAAAUAAGGGCACUAUCAGCAUCCAAGGUAGAGUGGAGCCUAUUGAGAACCGAAAGGAAAUCGAAGGAAAUUCUACUUGGCUGACAAUUGAACAGACUUAAUU .......(..((...(((((.....(((((((((....(((.((((...((....))...)))))))..))))))))).)))))....))..).......... ( -29.40) >DroYak_CAF1 35228 89 + 1 AAAAUAAGGCCACUGG--------------AAAUGGAGCCUAUUGAACACCGAAAGGAAAUCGAGGGAAAUUCAACUUGGCUGACAAUUGAACUGGCUUAAUU ......((((((.(..--------------((.((.((((..(((((..((....))...((....))..)))))...))))..)).))..).)))))).... ( -20.90) >consensus AAAAUAAGGGCACUAUCAGCAUCGAAAGUAGAGUGGAGCCUAUUGAGCGGCGAAAGGAAAUCGAGGGAAAUUCUACUUGGCUGACAAUUGAACUGACUUAAUU ......((..((...(((((.....(((((((((....(((.((((....(....)....)))))))..))))))))).)))))....))..))......... (-18.50 = -20.38 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:26 2006