| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,499,078 – 10,499,190 |
| Length | 112 |
| Max. P | 0.509438 |
| Location | 10,499,078 – 10,499,190 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 93.59 |
| Mean single sequence MFE | -28.98 |
| Consensus MFE | -26.48 |
| Energy contribution | -26.40 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.91 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509438 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10499078 112 + 22224390 AAGCAAUUGCAAAACUUUUUAUAGAGUUU-UUUCCUCUAUGUCGUAGCCUCAAUAUGGCCACAUAGUCGUAGUGCGACUGCUGUUCGUGUUUGGGUCAGUUUUCCGGCUCUUG .(((....(.((((((...(((((((...-....))))))).....((((.((((((..((..((((((.....)))))).))..)))))).)))).)))))).).))).... ( -28.60) >DroSec_CAF1 30160 113 + 1 AAGCAAUUGCAAAUCUUUUUAUGGAGUUUUUUUCCUCUAUGUCGUAGCCUCAAUACGGCCACAUAGUCGUAGUGCGACUGCUGUUCGUGUUUGGGUCUGUUUUUCGGCUCUUG ..((....))..........((((((........))))))((((((((((.((((((..((..((((((.....)))))).))..)))))).))).))).....))))..... ( -30.00) >DroSim_CAF1 30644 112 + 1 AAGCAAUUGCAAAACUUUUUAUGGAGUUU-UUUCCUCUAUGUCGUAGCCUCAAUAUGGCCACAUAGUCGUAGUGCGACUGCUGUUCGUGUUUGGGUCAGUUUUUCGGCUCUUG .(((....(.((((((...(((((((...-....))))))).....((((.((((((..((..((((((.....)))))).))..)))))).)))).)))))).).))).... ( -28.30) >DroEre_CAF1 31775 111 + 1 AAGCAAUUGCAAAAAC-UUUAUGGAGUUU-UUUCCUUUAUUUCGUAGCCUCAAUAUGGACACAUAGUCGUAGUGCGACUGCUGCUCGUGUUUGGGUCAGUUUUCCGGCUCUUG ...(((..((.(((((-(.((((((((..-........))))))))((((.((((((..((..((((((.....)))))).))..)))))).)))).))))))...))..))) ( -28.20) >DroYak_CAF1 33208 112 + 1 AAGCAAUUGCAAAACUUUUUAUGGAGUUC-UUUGCUCUAUUUGGUAGCCUCAAUAUGGCCACAUAGUCGUUGUGCGACUGCUGUUCGUGUUUGGGUCAGUUUUCCGGCUCUUG .(((....((...(((....(((((((..-...)))))))..))).((((.((((((..((..((((((.....)))))).))..)))))).))))..))......))).... ( -29.80) >consensus AAGCAAUUGCAAAACUUUUUAUGGAGUUU_UUUCCUCUAUGUCGUAGCCUCAAUAUGGCCACAUAGUCGUAGUGCGACUGCUGUUCGUGUUUGGGUCAGUUUUCCGGCUCUUG ...(((..((.........(((((((........))))))).....((((.((((((..((..((((((.....)))))).))..)))))).))))..........))..))) (-26.48 = -26.40 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:25 2006