Locus 3943

Sequence ID X_DroMel_CAF1
Location 10,498,602 – 10,498,692
Length 90
Max. P 0.841489
window6477

overview

Window 7

Location 10,498,602 – 10,498,692
Length 90
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 88.62
Mean single sequence MFE -17.50
Consensus MFE -12.97
Energy contribution -13.46
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.15
Structure conservation index 0.74
SVM decision value 0.75
SVM RNA-class probability 0.841489
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10498602 90 - 22224390
CAUAUACACACGUGGCUAAUGGCUAUAUACACUCAGCA---AACUGCUUUAAUAUGCUGACAUGUAUGUAUGUACAUGUAUGCAAAUAAGCAA
(((.((((.(((((((.....)))))(((((.((((((---.............))))))..))))))).)))).)))..(((......))). ( -21.12)
>DroSec_CAF1 29695 86 - 1
-A--CACACACGUGGCUAAUGGCUAUAUACACUCAGCAACCAACUGCUUUAAUAUGCUGACAUGUAUGUAU----AUUUAUGCAAAUAAGCAA
-.--(((....)))((.....))((((((((.((((((................))))))..)))))))).----.....(((......))). ( -17.29)
>DroSim_CAF1 30174 87 - 1
CA--CACACACGUGGCUAAUGGCUAUAUACACUCAGCAACCAACUGCUUUAAUAUGCUGACAUGUAUGUAU----AUUUAUGCAAAUAAGCAA
..--(((....)))((.....))((((((((.((((((................))))))..)))))))).----.....(((......))). ( -17.29)
>DroEre_CAF1 31332 80 - 1
-----ACACACAAGGCUAAUGGCUAUAUACACUCACC----AACUGCUUAAAUAUGCUGACAUGUAUGUAU----AUGUAUGCAAAUAAGCAA
-----........(((.....))).............----...((((((....(((..((((((....))----))))..)))..)))))). ( -14.30)
>consensus
_A__CACACACGUGGCUAAUGGCUAUAUACACUCAGCA___AACUGCUUUAAUAUGCUGACAUGUAUGUAU____AUGUAUGCAAAUAAGCAA
.............(((.....)))(((((((.((((((................))))))..)))))))...........(((......))). (-12.97 = -13.46 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:24 2006