Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,498,102 – 10,498,195 |
Length | 93 |
Max. P | 0.742528 |
Location | 10,498,102 – 10,498,195 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 87.31 |
Mean single sequence MFE | -17.39 |
Consensus MFE | -12.02 |
Energy contribution | -13.90 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.10 |
Mean z-score | -2.18 |
Structure conservation index | 0.69 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742528 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10498102 93 + 22224390 AUAAGAAAGUACUUUAAACUCUUUUAAGAGGCAUAUAGUCUGGAUCAAUAUGCUUAAAACGUACUUCCUGCAAGACUUCAACAAAACAUCAAU ...((.((((((......((((....))))((((((.(.......).)))))).......)))))).))........................ ( -14.90) >DroSec_CAF1 29204 93 + 1 AUAAGGAAGUACUUUUAACUCUUUUGAGAGGCAUAUAGUCUGGAUCAAUAUGCUUAAAACGUACUUCCUGCAAGACUUCAACAAAACAUCAAU ...(((((((((((((((((((....))))((((((.(.......).)))))))))))).)))))))))........................ ( -23.70) >DroSim_CAF1 29681 93 + 1 AUAAGGAAGUACUUUCAACUCUUUUAAGAGGCAUAUAGUCUGGAUCAAUAUGCUUAAAACGUACUUCCUGCAAGACUUCAACAAAACAUCAAU ...(((((((((......((((....))))((((((.(.......).)))))).......)))))))))........................ ( -21.70) >DroEre_CAF1 30852 93 + 1 AUGAGGAAGUACUUUCAACUUAAUUAAGAAGCAAACAGUCUGGAUCCAUAAGCUUAAAACGUACUUCCUGCGAAACUUCAACAAAGCAUCAAU .(((((((((((......(((....)))((((...................)))).....))))))))(((..............)))))).. ( -15.65) >DroYak_CAF1 31197 93 + 1 AUUAGAAAGUACUUUCAACUCUAUUAAGAAGCGUAUAUUCUCGAUCCAUAAACAUAAAACGUAUUUACUGCAAAGCUUCGGCAAAACAUCAAU ...((((.((((((((...........)))).)))).)))).(((...............(((.....)))...((....)).....)))... ( -11.00) >consensus AUAAGGAAGUACUUUCAACUCUUUUAAGAGGCAUAUAGUCUGGAUCAAUAUGCUUAAAACGUACUUCCUGCAAGACUUCAACAAAACAUCAAU ...(((((((((......((((....))))((((((.(.......).)))))).......)))))))))........................ (-12.02 = -13.90 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:23 2006