Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,497,727 – 10,497,830 |
Length | 103 |
Max. P | 0.647546 |
Location | 10,497,727 – 10,497,830 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 83.90 |
Mean single sequence MFE | -19.96 |
Consensus MFE | -13.64 |
Energy contribution | -13.64 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.81 |
Structure conservation index | 0.68 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647546 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10497727 103 - 22224390 UGUUUUACUGCGGCUGGGGCAUGCAACGCCCCUUAACUUUUAACCCAUUCC--UGUCCCGUGUUC---GCAG-CCCUCUUAACCCAUAGU----CCACCCCCCAACCACCCAU ......((((.((..(((((.((((((((......................--......))))).---))))-))))......)).))))----................... ( -16.79) >DroSec_CAF1 28835 95 - 1 UGUUUUACUGCGGCUGGGGCAUGCAACGCCCCUUAACUUUUAACCCAUUUC--UGUCCCGUUUCC---GCAGACCCCCUUAACCCAUAGU----ACACCCCU---------AU .......((((((..(((((.......))))).............((....--))........))---))))..................----........---------.. ( -18.60) >DroSim_CAF1 29312 95 - 1 UGUUUUACUGCGGCUGGGGCAUGCAACGCCCCUUAACUUUUAACCCAUUUC--UGUCCCGUUUCC---GCAGGCCCCCUUAACCCAUAGC----ACACCCCU---------AU .......((((((..(((((.......))))).............((....--))........))---))))..................----........---------.. ( -18.80) >DroEre_CAF1 30465 95 - 1 UGUUUUACUGCGGCUGGGGCAUGCAACGCCCCUUAACUUUUAACCCAUUCC--UGGCCCGUAUCC---GCAG-CCCCCUUAACCCAUAGACCCCCCACCCC------------ .......((((((..(((((.......)))))............(((....--))).......))---))))-............................------------ ( -21.00) >DroYak_CAF1 30821 96 - 1 UGUUUUACUGCGGCUGGGGCAUGCAACGCCCCUUAACUUUUAACCCAUUCCCAUGUCCCGUUUCCGCCGCAG-UCCCCUUAACCC-------CCCCGCCCCU---------UU ......(((((((((((((((((............................))))))))).....)))))))-)...........-------..........---------.. ( -24.59) >consensus UGUUUUACUGCGGCUGGGGCAUGCAACGCCCCUUAACUUUUAACCCAUUCC__UGUCCCGUUUCC___GCAG_CCCCCUUAACCCAUAGU____CCACCCCU_________AU .......((((....(((((.......))))).............((......)).............))))......................................... (-13.64 = -13.64 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:22 2006