Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,168,382 – 1,168,502 |
Length | 120 |
Max. P | 0.500000 |
Location | 1,168,382 – 1,168,502 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.97 |
Mean single sequence MFE | -28.84 |
Consensus MFE | -22.38 |
Energy contribution | -23.74 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.09 |
Mean z-score | -1.45 |
Structure conservation index | 0.78 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1168382 120 + 22224390 UGCCAAUAAACAUUUUAGGGGGCGCAACCUAAGUGAAUAGGUAAAAGUUUCCUAGUUGACAUCAUCGACCAGGCCACUUGGAUUGCAGAAACCUUUAAUUCGCCAUUAAGUGUGCAAUUA (((......((((((.....(((((((.(((((((..((((.........))))(((((.....))))).....))))))).)))).(((........))))))...))))))))).... ( -29.60) >DroSec_CAF1 4370 120 + 1 UGCCAAUAAACAUUUUAGGGGGCGCAACCCAAGUGAAUAGGUAAAAGUUUCCUAGUUGACAUCAUCGGCCAGGCCACUUGGAUUGCAGAAACCUUUAAUUCGCCAUUAAGUGUGCAAUUA (((......((((((.....(((((((.(((((((..((((.........))))(((((.....))))).....))))))).)))).(((........))))))...))))))))).... ( -31.40) >DroSim_CAF1 4887 120 + 1 UGCCAAUAAACAUUUUAGGGGGCGCAACCCAAGUGAAUAGGUAAAAGUUUCCUAGUUGACAUCAUCGGCCAGGCCACUUGGAUUGCAGAAACCUUUAAUUCGCCAUUAAGUGUGCAAUUA (((......((((((.....(((((((.(((((((..((((.........))))(((((.....))))).....))))))).)))).(((........))))))...))))))))).... ( -31.40) >DroEre_CAF1 3516 115 + 1 UGCCAAUAAACAUUUUAGGGGGCGCAACCCAAGUGAAUAGGUAAAAGUUUUCUAGUUGACAUCAUCGAC-----CACUUGGAUUGCGAAAACCUUUAAUACGCCAUUAAGUGUGCAAUUA (((...........(((((((.(((((.(((((((..((((.........))))(((((.....)))))-----))))))).)))))....))))))).((((......))))))).... ( -32.20) >DroYak_CAF1 6332 106 + 1 UGCCAAUAAACAUUUUAGGGGGCGCAACCCAAGUGAAUAGGUAAAAGUUUCCUAGUUGACAUCAUCG--------------AUUGCAAAAACCUUUAAUUCGCAAUUAAGUGUGCAAUUA (((((.............(((......)))..((((((((((.....(((..(((((((.....)))--------------))))..)))))))...)))))).......)).))).... ( -19.60) >consensus UGCCAAUAAACAUUUUAGGGGGCGCAACCCAAGUGAAUAGGUAAAAGUUUCCUAGUUGACAUCAUCGACCAGGCCACUUGGAUUGCAGAAACCUUUAAUUCGCCAUUAAGUGUGCAAUUA (((((.........(((((((..((((.(((((((..((((.........))))(((((.....))))).....))))))).)))).....)))))))............)).))).... (-22.38 = -23.74 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:25 2006