Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,494,326 – 10,494,443 |
Length | 117 |
Max. P | 0.821461 |
Location | 10,494,326 – 10,494,443 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.71 |
Mean single sequence MFE | -28.43 |
Consensus MFE | -23.46 |
Energy contribution | -24.35 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.06 |
Mean z-score | -1.85 |
Structure conservation index | 0.83 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554949 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10494326 117 + 22224390 GUCCUUUUGUCCAACUGCUUGUGGCGCUUUCGCAAUUUGAUUUAUGUGUUGCC---CCCAAAACAUUCAUUAAGAUAUAAUCAUAACGCAUAGAAAGCGCACACAAACAGGAUGAGUAUG .....((..(((...((.(((((((((((((((...(((((..((((.(((..---..))).))))..)))))(((...))).....))...)))))))).))))).)))))..)).... ( -30.20) >DroSec_CAF1 25502 117 + 1 GUCCUUUUGUCCAACAGCUUGUGGCGCUUUCGCAAUUUGAUUUAUGUGUUGCC---CCCAAAACAUUCAUUAAGAUAUAAUCAUAACGCAUAGAAAGCGCACACAAACAGGAUGAGUAUG .....((..(((....(.(((((((((((((((...(((((..((((.(((..---..))).))))..)))))(((...))).....))...)))))))).))))).).)))..)).... ( -28.50) >DroSim_CAF1 26014 117 + 1 GUCCUUUUGUCCAACUGCUUGUGGCGCUUUCGCAAUUUGAUUUAUGUGUUGCC---CCCAAAACAUUCAUUAAGAUAUAAUCAUAACGCAUAGAAAGCGCACACAAACAGGAUGAGUAUG .....((..(((...((.(((((((((((((((...(((((..((((.(((..---..))).))))..)))))(((...))).....))...)))))))).))))).)))))..)).... ( -30.20) >DroEre_CAF1 27125 117 + 1 GUCCUUUUGUCCAACUGCUUGUGGCGCUUUCGCAAUUUGAUUUAUGUGUUGCC---CCCAAAACAUUCAUUAAGAUAUAAUCAUAACGCAUAGAAAGCGCACACAAACAGGAUGAGUAUG .....((..(((...((.(((((((((((((((...(((((..((((.(((..---..))).))))..)))))(((...))).....))...)))))))).))))).)))))..)).... ( -30.20) >DroYak_CAF1 27430 117 + 1 GUCCUUGUGUCCAACUGCUUGUGGCGCUUUCGCAAUUUGAUUUAUGUGUUGCC---CCCAAAACAUUCAUUAAGAUAUAAUCAUAACGCAUAGAAAGCGCACACAAACAGGAUGAGUACG ......(((..((.(((.(((((((((((((((...(((((..((((.(((..---..))).))))..)))))(((...))).....))...)))))))).))))).)))..))..))). ( -32.70) >DroAna_CAF1 28397 114 + 1 GUCCUUUUGUCCAACUGCUUGUGGCGUUUUCGCAAUUUGAUUUAUGUCCUGGCCCCCCAAAAACAUUCAUUAAGAUAUAAUCAUAACGCAUACAAGGCGCAAACACUCACACUC------ .....(((((((...(((((((((((....)))..((((((..((((..(((....)))...))))..)))))).......))))).))).....)).)))))...........------ ( -18.80) >consensus GUCCUUUUGUCCAACUGCUUGUGGCGCUUUCGCAAUUUGAUUUAUGUGUUGCC___CCCAAAACAUUCAUUAAGAUAUAAUCAUAACGCAUAGAAAGCGCACACAAACAGGAUGAGUAUG ..............(((.(((((((((((((((...(((((..((((.(((.......))).))))..)))))(((...))).....))...)))))))).))))).))).......... (-23.46 = -24.35 + 0.89)
Location | 10,494,326 – 10,494,443 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.71 |
Mean single sequence MFE | -33.17 |
Consensus MFE | -27.50 |
Energy contribution | -28.87 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.03 |
Mean z-score | -2.23 |
Structure conservation index | 0.83 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10494326 117 - 22224390 CAUACUCAUCCUGUUUGUGUGCGCUUUCUAUGCGUUAUGAUUAUAUCUUAAUGAAUGUUUUGGG---GGCAACACAUAAAUCAAAUUGCGAAAGCGCCACAAGCAGUUGGACAAAAGGAC .....((...(((((((((.((((((((...(((...(((((...((.....))((((.(((..---..))).)))).)))))...))))))))))))))))))))...))......... ( -34.90) >DroSec_CAF1 25502 117 - 1 CAUACUCAUCCUGUUUGUGUGCGCUUUCUAUGCGUUAUGAUUAUAUCUUAAUGAAUGUUUUGGG---GGCAACACAUAAAUCAAAUUGCGAAAGCGCCACAAGCUGUUGGACAAAAGGAC ........(((.(((((((.((((((((...(((...(((((...((.....))((((.(((..---..))).)))).)))))...))))))))))))))))))....)))......... ( -33.20) >DroSim_CAF1 26014 117 - 1 CAUACUCAUCCUGUUUGUGUGCGCUUUCUAUGCGUUAUGAUUAUAUCUUAAUGAAUGUUUUGGG---GGCAACACAUAAAUCAAAUUGCGAAAGCGCCACAAGCAGUUGGACAAAAGGAC .....((...(((((((((.((((((((...(((...(((((...((.....))((((.(((..---..))).)))).)))))...))))))))))))))))))))...))......... ( -34.90) >DroEre_CAF1 27125 117 - 1 CAUACUCAUCCUGUUUGUGUGCGCUUUCUAUGCGUUAUGAUUAUAUCUUAAUGAAUGUUUUGGG---GGCAACACAUAAAUCAAAUUGCGAAAGCGCCACAAGCAGUUGGACAAAAGGAC .....((...(((((((((.((((((((...(((...(((((...((.....))((((.(((..---..))).)))).)))))...))))))))))))))))))))...))......... ( -34.90) >DroYak_CAF1 27430 117 - 1 CGUACUCAUCCUGUUUGUGUGCGCUUUCUAUGCGUUAUGAUUAUAUCUUAAUGAAUGUUUUGGG---GGCAACACAUAAAUCAAAUUGCGAAAGCGCCACAAGCAGUUGGACACAAGGAC .((..(((..(((((((((.((((((((...(((...(((((...((.....))((((.(((..---..))).)))).)))))...)))))))))))))))))))).)))..))...... ( -36.00) >DroAna_CAF1 28397 114 - 1 ------GAGUGUGAGUGUUUGCGCCUUGUAUGCGUUAUGAUUAUAUCUUAAUGAAUGUUUUUGGGGGGCCAGGACAUAAAUCAAAUUGCGAAAACGCCACAAGCAGUUGGACAAAAGGAC ------(..((((.((((((.(((........(((((.(((...))).))))).(((((((.((....)))))))))..........))).))))))))))..)................ ( -25.10) >consensus CAUACUCAUCCUGUUUGUGUGCGCUUUCUAUGCGUUAUGAUUAUAUCUUAAUGAAUGUUUUGGG___GGCAACACAUAAAUCAAAUUGCGAAAGCGCCACAAGCAGUUGGACAAAAGGAC ..........(((((((((.((((((((...(((...(((((...((.....))((((.(((.......))).)))).)))))...)))))))))))))))))))).............. (-27.50 = -28.87 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:18 2006