Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,493,663 – 10,493,759 |
Length | 96 |
Max. P | 0.500000 |
Location | 10,493,663 – 10,493,759 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 79.07 |
Mean single sequence MFE | -23.73 |
Consensus MFE | -11.35 |
Energy contribution | -12.43 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.11 |
Mean z-score | -1.88 |
Structure conservation index | 0.48 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10493663 96 - 22224390 UGGAGCAGUCU-----CGUCUAAUGGAGCUCC----ACUGCUCCCACUCCUGCAUUCUAAUCCCUGCGACGCUUCCCAC--CCAACGAUUUCCGAUUUCGGAUU-------UCC .(((((.(((.-----........(((((...----...))))).......(((..........)))))))))))....--.....((..((((....))))..-------)). ( -26.30) >DroSec_CAF1 24863 96 - 1 UGCAGCAGUCU-----CGUCUAAUGGAGCUCC----UCUACUCCCACUCCUGCAUCCUAGUCCCUGCGACGCUUCCCAC--CCUACGAUAUCCGAUUUCGGAUU-------UCC (((((.(((..-----........((((....----....)))).))).))))).....(((.....))).........--.....((.(((((....))))).-------)). ( -19.50) >DroSim_CAF1 25353 96 - 1 UGCAGCAGUCU-----CGUCUAAUGGAGCUCC----UCUACUCCCACUUCUGCAUCCUGGUCCCUGCGACGCUUCCCAC--CCUACGAUUUCCGAUUUCGGAUU-------UCC (((((.(((..-----........((((....----....)))).))).))))).....(((.....))).........--.....((..((((....))))..-------)). ( -19.10) >DroEre_CAF1 26459 102 - 1 UGGAGCGGUCC-----CGUCUAAUGGAG------CUACUGCUACUGCUCCUGCUUCCUUAUCCCUCCGACGCUUCCCCCCUCCUACGAUUUCCGGCUUCGGAUUGCC-AUGUCC .((((((((.(-----(((...))))((------(....)))))))))))..............(((((.(((....................))).))))).....-...... ( -25.05) >DroYak_CAF1 26704 112 - 1 UGGAGCAGUCUCGUCUCGUCUAACGGAGCACCAGCUCCCGCUCCCGCUCCUGCUUCCUAAUCCCUCCGAAGCUUCCCAC--CCUACGAUUUCCGAUUUUGGAUUUCGAAUUUCC .(((((((.(.......).))...(((((....))))).......))))).(((((...........))))).......--....(((..((((....))))..)))....... ( -28.70) >consensus UGGAGCAGUCU_____CGUCUAAUGGAGCUCC____ACUGCUCCCACUCCUGCAUCCUAAUCCCUGCGACGCUUCCCAC__CCUACGAUUUCCGAUUUCGGAUU_______UCC .(((((.(((..............((((..................)))).(((..........)))))))))))...............((((....))))............ (-11.35 = -12.43 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:16 2006