Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,488,660 – 10,488,768 |
Length | 108 |
Max. P | 0.995561 |
Location | 10,488,660 – 10,488,768 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -21.28 |
Consensus MFE | -18.88 |
Energy contribution | -19.16 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -2.19 |
Structure conservation index | 0.89 |
SVM decision value | 2.59 |
SVM RNA-class probability | 0.995561 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10488660 108 + 22224390 CCGGCUUUGCCUUUGAUUUCUUCUCUCCAUCUCCGAGCUGCUGUCUUCACAAUUAGCUAAGCUCUGUCUUAGCAAAGUCGACAACAUGACAACAAAUGCCUCCUUUCU .(((((((((....((.....))...........(((((((((..........))))..))))).......)))))))))............................ ( -22.00) >DroSec_CAF1 19361 106 + 1 CCGGCUUU-CCUUUGAUUUCUUCUCUCCAUCUCCGAGCUGCUGUCUUCACAAUUAGCUAAGCUCUGUCUUAGCA-AGUCGACAACAUGACAACAACUGCCUCCUUUCU ..(((...-.....(((..(..(((.........)))..)..)))..........((((((......)))))).-.((((......)))).......)))........ ( -16.60) >DroSim_CAF1 19989 108 + 1 CCGGCUUUGCCUUUGAUUUCUUCUCUCCAUCUCCGAGCUGCUGUCUUCACAAUUAGCUAAGCUCUGUCUUAGCAAAGUCGACAACAUGACAACAACUGCCUCCUUUCU .(((((((((....((.....))...........(((((((((..........))))..))))).......)))))))))............................ ( -22.00) >DroEre_CAF1 20687 108 + 1 CCGGCUUUGCCUUUGAUUUCUUCUCUCCAUCUCCAGGCUGCUGUCUUCACAAUUAGCUAAGCUCUGUCUUAGCAAAGUCGACAACAUGACAACAACUGCCUCCUUUCU .(((((((((....((.....))..........((((((((((..........))))..))).))).....)))))))))............................ ( -20.60) >DroYak_CAF1 21684 108 + 1 CCGGCUUUGCCUUUGAUUUCUUCUCUCCAUCUCCGAGCUGCUGUCUUCACAAUUAGCUAAGCUCUGUCUUAGCAAAGUUGUCAACAUGACAACAACUGCCUCUUUACU ..((((((((....((.....))...........(((((((((..........))))..))))).......)))))((((((.....))))))....)))........ ( -25.20) >consensus CCGGCUUUGCCUUUGAUUUCUUCUCUCCAUCUCCGAGCUGCUGUCUUCACAAUUAGCUAAGCUCUGUCUUAGCAAAGUCGACAACAUGACAACAACUGCCUCCUUUCU .(((((((((....((.....))...........(((((((((..........))))..))))).......)))))))))............................ (-18.88 = -19.16 + 0.28)
Location | 10,488,660 – 10,488,768 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -28.02 |
Consensus MFE | -24.66 |
Energy contribution | -24.70 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.92 |
Structure conservation index | 0.88 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980909 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10488660 108 - 22224390 AGAAAGGAGGCAUUUGUUGUCAUGUUGUCGACUUUGCUAAGACAGAGCUUAGCUAAUUGUGAAGACAGCAGCUCGGAGAUGGAGAGAAGAAAUCAAAGGCAAAGCCGG ........(((.((((((....(((((((.((...((((((......)))))).....))...))))))).(((.........)))...........))))))))).. ( -27.50) >DroSec_CAF1 19361 106 - 1 AGAAAGGAGGCAGUUGUUGUCAUGUUGUCGACU-UGCUAAGACAGAGCUUAGCUAAUUGUGAAGACAGCAGCUCGGAGAUGGAGAGAAGAAAUCAAAGG-AAAGCCGG ........(((((((((((((...(((.(((..-.((((((......))))))...)))))).))))))))))....(((...........))).....-...))).. ( -26.90) >DroSim_CAF1 19989 108 - 1 AGAAAGGAGGCAGUUGUUGUCAUGUUGUCGACUUUGCUAAGACAGAGCUUAGCUAAUUGUGAAGACAGCAGCUCGGAGAUGGAGAGAAGAAAUCAAAGGCAAAGCCGG .....((..((..(((...((.(((((((.((...((((((......)))))).....))...))))))).(((.........)))..))...)))..))....)).. ( -27.60) >DroEre_CAF1 20687 108 - 1 AGAAAGGAGGCAGUUGUUGUCAUGUUGUCGACUUUGCUAAGACAGAGCUUAGCUAAUUGUGAAGACAGCAGCCUGGAGAUGGAGAGAAGAAAUCAAAGGCAAAGCCGG ........(((...........(((((((.((...((((((......)))))).....))...)))))))((((...(((...........)))..))))...))).. ( -29.20) >DroYak_CAF1 21684 108 - 1 AGUAAAGAGGCAGUUGUUGUCAUGUUGACAACUUUGCUAAGACAGAGCUUAGCUAAUUGUGAAGACAGCAGCUCGGAGAUGGAGAGAAGAAAUCAAAGGCAAAGCCGG ........(((((((((((((...((.((((....((((((......))))))...)))).))))))))))))....(((...........))).........))).. ( -28.90) >consensus AGAAAGGAGGCAGUUGUUGUCAUGUUGUCGACUUUGCUAAGACAGAGCUUAGCUAAUUGUGAAGACAGCAGCUCGGAGAUGGAGAGAAGAAAUCAAAGGCAAAGCCGG ........(((.(((((((((...(((.(((....((((((......))))))...)))))).))))))))).....(((...........))).........))).. (-24.66 = -24.70 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:04 2006