Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,167,902 – 1,168,021 |
Length | 119 |
Max. P | 0.585158 |
Location | 1,167,902 – 1,168,021 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 98.88 |
Mean single sequence MFE | -32.60 |
Consensus MFE | -32.60 |
Energy contribution | -32.60 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 1.00 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585158 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1167902 119 + 22224390 ACUCUGACAAAUUGAUAUGCACAUUCGGCGACAUUAGCAUAUGUCGCGUAUGCCUUAAUUAACUAUUCCGCUCAGCUAAUAUCGGUUUCACCCACCCCACAAGGGGCGUUUGGGGCCCU .............(((((((.......(((((((......)))))))....((...(((.....)))..))...))..)))))(((..((..(.((((....)))).)..))..))).. ( -32.60) >DroSec_CAF1 3901 119 + 1 ACUCUGACAAAUUGAUAUGCACAUUCGGCGACAUUAGCAUAUGUCGCGUAUGCCUUAAUUAACUAUUCCGCUCAGCUAAUAUCGGUUUCACCCACCCCACAAGGGGCGUUUGGGGCCCU .............(((((((.......(((((((......)))))))....((...(((.....)))..))...))..)))))(((..((..(.((((....)))).)..))..))).. ( -32.60) >DroEre_CAF1 2961 117 + 1 AC--UGACAAAUUGAUAUGCACAUUCGGCGACAUUAGCAUAUGUCGCGUAUGCCUUAAUUAACUAUUCCGCUCAGCUAAUAUCGGUUUCACCCACCCCACAAGGGGCGUUUGGGGCCCU ..--.........(((((((.......(((((((......)))))))....((...(((.....)))..))...))..)))))(((..((..(.((((....)))).)..))..))).. ( -32.60) >DroYak_CAF1 5845 117 + 1 AC--UGACAAAUUGAUAUGCACAUUCGGCGACAUUAGCAUAUGUCGCGUAUGCCUUAAUUAACUAUUCCGCUCAGCUAAUAUCGGUUUCACCCACCCCACAAGGGGCGUUUGGGGCCCU ..--.........(((((((.......(((((((......)))))))....((...(((.....)))..))...))..)))))(((..((..(.((((....)))).)..))..))).. ( -32.60) >consensus AC__UGACAAAUUGAUAUGCACAUUCGGCGACAUUAGCAUAUGUCGCGUAUGCCUUAAUUAACUAUUCCGCUCAGCUAAUAUCGGUUUCACCCACCCCACAAGGGGCGUUUGGGGCCCU .............(((((((.......(((((((......)))))))....((...(((.....)))..))...))..)))))(((..((..(.((((....)))).)..))..))).. (-32.60 = -32.60 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:24 2006