Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,487,321 – 10,487,412 |
Length | 91 |
Max. P | 0.999955 |
Location | 10,487,321 – 10,487,412 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 94.56 |
Mean single sequence MFE | -31.14 |
Consensus MFE | -30.44 |
Energy contribution | -30.60 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -2.47 |
Structure conservation index | 0.98 |
SVM decision value | 4.84 |
SVM RNA-class probability | 0.999955 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10487321 91 + 22224390 AGGCGGCGGGGGCGUAUCCUGAGUGUGUCCUGGCCGCUGUGGCACUGAAGUAAUGCCAAAAAGUGCGCAAGCAACACAUACAAA-AAAAAAA .((((((.(((((((((.....))))))))).)))))).(((((.........))))).....(((....)))...........-....... ( -33.30) >DroSec_CAF1 18036 88 + 1 AGGCAGCGGGGGCGUGUCCUGAGUGUGUCCUGGCCGCUGUGGCACUGAAGUAAUGCCAAAAAGUGCGCAAGCAACACAC----ACAAAAAAA ..((((((((((((..(.....)..)))))...)))))))((((.........))))......(((....)))......----......... ( -28.40) >DroSim_CAF1 18650 92 + 1 AGGCAGCGGGGGCGUGUCCUGAGUGUGUCCUGGCCGCUGUGGCACUGAAGUAAUGCCAAAAAGUGCGCAAGCAACACACACACACACAAAAA ..((((((((((((..(.....)..)))))...)))))))((((.........))))......(((....)))................... ( -28.40) >DroEre_CAF1 19305 92 + 1 AGGCGGUGGGGGCGUGUCCUGAGUGUGUCCUGGCCGCUGUGGCACUGAAGUAAUGCCAAAAAGUGCGCAAGCAACACACACACACAAAAAAA .((((((.((((((..(.....)..)))))).)))))).(((((.........))))).....(((....)))................... ( -32.80) >DroYak_CAF1 20247 91 + 1 AGGCGGUGGGGGCGUGUCCUGAGUGUGUCCUGGCCGCUGUGGCACUGAAGUAAUGCCAAAAAGUGCGCAAGCAACACACACAAA-AAAAAAA .((((((.((((((..(.....)..)))))).)))))).(((((.........))))).....(((....)))...........-....... ( -32.80) >consensus AGGCGGCGGGGGCGUGUCCUGAGUGUGUCCUGGCCGCUGUGGCACUGAAGUAAUGCCAAAAAGUGCGCAAGCAACACACACAAACAAAAAAA .((((((.((((((..(.....)..)))))).)))))).(((((.........))))).....(((....)))................... (-30.44 = -30.60 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:03 2006