Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,486,521 – 10,486,639 |
Length | 118 |
Max. P | 0.581880 |
Location | 10,486,521 – 10,486,639 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.43 |
Mean single sequence MFE | -12.03 |
Consensus MFE | -7.47 |
Energy contribution | -7.37 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.19 |
Mean z-score | -1.69 |
Structure conservation index | 0.62 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581880 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10486521 118 - 22224390 UCACCACGCAAAAUCUUCAUUACUUUUUCAAUGAAUUUAUUAAUUCCAC--AAGUUAAAUGCCAUUUAUCUCUUUUGAGAAAAGUUUAAAUCACAAAGUUUAUCAUAACUAUCCCUUUUU .......(((.....((((((........))))))....((((((....--.)))))).))).((((.((((....)))).))))...........((((......)))).......... ( -10.70) >DroEre_CAF1 18535 103 - 1 --------------CGCCAUUACUUUUUCAAUGCAUUUAUUAACUCCAC--AAGUUAAAUGCCAUUUAUCUCUUUUGAGAAAAAUGUAAAUCACAAAGUUUGUCAUAACUAUCCCUU-CC --------------.(.((..(((((......(((((((...(((....--.))))))))))(((((.((((....)))).)))))........))))).)).).............-.. ( -15.10) >DroYak_CAF1 19444 119 - 1 CCACCACAAAAAACACCCAUUACUUUUUCAAUGAAUUUAUUAUUUCUAAUGACAUUAAAGAACAUUUAUCUCUUUUGAGAAAAGUUGAAAUCACAAAGUUUAUCAUAACUAUCCCUU-UC .........................(((((((....((((((....))))))................((((....))))...)))))))......((((......)))).......-.. ( -10.30) >consensus _CACCAC__AAAA_CCCCAUUACUUUUUCAAUGAAUUUAUUAAUUCCAC__AAGUUAAAUGCCAUUUAUCUCUUUUGAGAAAAGUUUAAAUCACAAAGUUUAUCAUAACUAUCCCUU_UC ...............................(((((((.((((((.......))))))..........((((....)))).)))))))........((((......)))).......... ( -7.47 = -7.37 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:02 2006