Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,483,016 – 10,483,128 |
Length | 112 |
Max. P | 0.998542 |
Location | 10,483,016 – 10,483,128 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.01 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -27.12 |
Energy contribution | -26.92 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.79 |
Structure conservation index | 0.99 |
SVM decision value | 3.14 |
SVM RNA-class probability | 0.998542 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10483016 112 - 22224390 UGCUUUAUUGUUUCUAAAAUGUGCUAAAGCAAAAUAAACAAAAGAGCCGCCAAAGACAGAUGCUCAAAGGAGGCGAUUCCGAGCACGGGGAUUCCUACAAAAAA--------CUGGGCGC .(((((.((((((........(((....)))....)))))).)))))((((.....(((.(((((...((((....))))))))).(((....)))........--------))))))). ( -27.30) >DroSec_CAF1 13782 112 - 1 UGCUUUAUUGUUUCUAAAAUGUGCUAAAGCAAAAUAAACAAAAGAGCCGCCAAAGACAGAUGCUCAAAGGAAGCGAUUCCAAGCACGGGGAUUCCUACAAAAAA--------GUGGGCGC (((((.(((((((((......(((....)))............((((..(........)..))))...)))))))))...)))))........(((((......--------)))))... ( -24.80) >DroSim_CAF1 13972 112 - 1 UGCUUUAUUGUUUCUAAAAUGUGCUAAAGCAAAAUAAACAAAAGAGCCGCCAAAGACAGAUGCUCAAAGGAAGCGAUUCCGAGCACGGGGAUUCCUACAAAAAA--------GUGGGCGC .(((((.((((((........(((....)))....)))))).)))))((((.........(((((...((((....))))))))).(((....)))........--------...)))). ( -27.70) >DroEre_CAF1 15205 120 - 1 UGCUUUAUUGUUUCUAAAAUGUGCUAAAGCAAAAUAAACAAAAGAGCCGCCAAAGACAGAUGCUCAAAGGAGACGAUUCCGAGCACGGGGAUUCCCAAAAAAAAAACAAAAAUUGGGCGC .(((((.((((((........(((....)))....)))))).)))))((((.........(((((...((((....))))))))).(((....)))...................)))). ( -28.80) >DroYak_CAF1 15913 119 - 1 UGCUUUAUUGUUUCUAAAAUGUGCUAAAGCAAAAUAAACAAAAGAGCCGCCAAAGACAGAUGCUCAAAGGAGACGAUUCCGAGCACGGGGAUUCCUACAAAAAAAA-AUUUUUUGGGCGC .(((((.((((((........(((....)))....)))))).)))))((((.........(((((...((((....))))))))).(((....))).((((((...-..)))))))))). ( -27.90) >consensus UGCUUUAUUGUUUCUAAAAUGUGCUAAAGCAAAAUAAACAAAAGAGCCGCCAAAGACAGAUGCUCAAAGGAGGCGAUUCCGAGCACGGGGAUUCCUACAAAAAA________GUGGGCGC .(((((.((((((........(((....)))....)))))).)))))((((.........(((((...((((....))))))))).(((....)))...................)))). (-27.12 = -26.92 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:56 2006