Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,482,375 – 10,482,488 |
Length | 113 |
Max. P | 0.615611 |
Location | 10,482,375 – 10,482,488 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 90.56 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -18.42 |
Energy contribution | -19.06 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -1.57 |
Structure conservation index | 0.77 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615611 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10482375 113 + 22224390 CAUAUUUCCCUACUUACUGGCUGUAAACCAAAUCGGCUUAGGGAAUGGAAAGGAAAAACUACCCAACCAACUUAAAAGUUGCGUUUAUCCUUCCAGAA-AUUCAGUGACUUCGC .....(((((((......(((((..........))))))))))))(((((.(((.((((........(((((....))))).)))).))))))))...-.....(((....))) ( -25.00) >DroSec_CAF1 13143 113 + 1 CAUAUUUUCCUCCGUACUGCCUGUAAACCAAAUCGGCUUAUCGAAUGGAAUGGAAAAACUACCCAACCAACUUAAAAGUUGCGUUUAUCCUUCCAGAA-AUUCAGUGACUUCGC (((..((((...((....(((.((.......)).)))....))..(((((.(((.((((........(((((....))))).)))).)))))))))))-)....)))....... ( -18.20) >DroSim_CAF1 13322 113 + 1 CAUAUUUUCCUCCUUACUGCCUGUAAACCAAAUCGGCUUAUCGAAUGGAAUGGAAAAACUACCCAACCAACUUAAAAGUUGCGUUUAUCCUUCCAGAA-AUUCAGUGACUUCGC .............((((((.(.((((.((.....)).)))).)..(((((.(((.((((........(((((....))))).)))).))))))))...-...))))))...... ( -18.90) >DroEre_CAF1 14559 110 + 1 CAUAUUUU---UUUCACUGGCUGCAAACCAAAUCGGUUUAGGGCAUGGAA-GGAAAAACUACCCAACCAACUCUAAAGUUGCGUUUAUCCUUCCAGAAAAUUCAGUGACUUCGC ........---..(((((((((..(((((.....)))))..))).(((((-(((.((((........(((((....))))).)))).)))))))).......))))))...... ( -32.10) >DroYak_CAF1 15251 113 + 1 CAUAUUUUCAUCUUUACUGGCUGUAAACCUAAUCGGCUUAGGGAAUGGAAUGGAAAAACUACCCAACAAGCGCAAAAGUUGCGUUUAUCCUUCCAGAA-AUUCAGUGACUUCGC .............((((((((((..........))))....((((.(((.(((.........)))..(((((((.....))))))).)))))))....-...))))))...... ( -25.30) >consensus CAUAUUUUCCUCCUUACUGGCUGUAAACCAAAUCGGCUUAGGGAAUGGAAUGGAAAAACUACCCAACCAACUUAAAAGUUGCGUUUAUCCUUCCAGAA_AUUCAGUGACUUCGC .............((((((.((.(((.((.....)).))).))..(((((.(((.((((....((((..........)))).)))).)))))))).......))))))...... (-18.42 = -19.06 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:55 2006