Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,481,776 – 10,481,879 |
Length | 103 |
Max. P | 0.587871 |
Location | 10,481,776 – 10,481,879 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 86.48 |
Mean single sequence MFE | -25.77 |
Consensus MFE | -24.66 |
Energy contribution | -25.26 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.32 |
Structure conservation index | 0.96 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10481776 103 - 22224390 -------CCC-UCCCCUGUAUCCACUAACUUUCAGCAUUUUUAACCCCUCGCCAGGAUCCUUUGUCCUCUUUGCCAGCGCUGUCAUGUGUGACGCGUGGUUAAAAAUUUGA -------...-....................((((.((((((((((....((.(((((.....)))))....))..((((.((((....)))))))))))))))))))))) ( -24.10) >DroSec_CAF1 12616 104 - 1 -------CCCGUCCACUGUAUCCACUAACUCUCAGCAUUUUUAACCCCUCGCCAGGAUCCUUUGUCCUGUUUGCCGGCGCUGUCAUGUGUGACGCGUGGUUAAAAAUUUGA -------........................((((.((((((((((....((((((((.....))))))...))..((((.((((....)))))))))))))))))))))) ( -27.00) >DroSim_CAF1 12799 104 - 1 -------CCCGUCCACUGUAUCCACUAACUUUCAGCAUUUUCAACCCCUCGCCAGGAUCCUUUGUCCUGUUUGCCGGCGCUGUCAUGUGUGACGCGUGGUUAAAAAUUUGA -------........................((((.(((((.((((....((((((((.....))))))...))..((((.((((....)))))))))))).))))))))) ( -23.20) >DroEre_CAF1 13953 110 - 1 UUAAAUGCCC-ACCUCUAGCACCGCCAACUUUCAGCAUUUGUAACCCCUCGCCAGGAUCCUUUGUCCUGUUUGUCGGCGCUGUCAUGUGUGACGCGUGGUUAAAAAUUUGA .(((((((..-.......((...)).........)))))))(((((...(((((((((.....))))))...((((.(((......)))))))))).)))))......... ( -26.27) >DroYak_CAF1 14628 99 - 1 ------------CCCCUACCAACGUCAACUUUCAGCAUUUUUAACCCUCCGCCAGGAUACUUUGUCCUGUUUGUCGGCGCUGUCAUGUGUGACGCGUGGUUAAAAAUUUGA ------------...................((((.((((((((((...(((((((((.....))))))...((((.(((......)))))))))).)))))))))))))) ( -28.30) >consensus _______CCC_UCCACUGUAUCCACUAACUUUCAGCAUUUUUAACCCCUCGCCAGGAUCCUUUGUCCUGUUUGCCGGCGCUGUCAUGUGUGACGCGUGGUUAAAAAUUUGA ...............................((((.((((((((((......((((((.....)))))).......((((.((((....)))))))))))))))))))))) (-24.66 = -25.26 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:54 2006