Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,481,360 – 10,481,471 |
Length | 111 |
Max. P | 0.659205 |
Location | 10,481,360 – 10,481,471 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 93.96 |
Mean single sequence MFE | -29.94 |
Consensus MFE | -27.22 |
Energy contribution | -27.50 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.03 |
Mean z-score | -1.18 |
Structure conservation index | 0.91 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10481360 111 - 22224390 AACUUGGAC-------AGAGAGAGCUCUCACCCAGAACUGAUUGGAAAUCAUAAAUGAAAGGCCAGACUGCAGAACUUGAUUUAAAGACUCUGGCCAA-AGGUUCUUGGGAUUCUUUCC .....(((.-------((((((....))).((((((((((((.....)))..........(((((((((..(((......)))..))..)))))))..-.))))).))))..))).))) ( -31.70) >DroSec_CAF1 12214 111 - 1 AACUUGGAC-------ACAGAGAGCUCUCACCCAGAACUGAUUGGAAAUCAUAAAUGAAAGGCCGGACUGCAGUACUUGAUUUAAAGACUCUGGCCAA-AGGUUCUUGGGAUUCUUUCC .....(((.-------...(((....))).((((((((((((.....)))..........(((((((.....((.(((......))))))))))))..-.))))).))))......))) ( -29.30) >DroSim_CAF1 12405 111 - 1 AACUUGGAC-------AGAGAGAGCUCUCACCCAGAACUGAUUGGAAAUCAUAAAUGAAAGGCCCGACUGCAGUACUUGAUUUAAAGACUCUGGCCAA-AGGUUCUUGGGAUUCUUUCC .....(((.-------((((((....))).((((((((((((.....)))..........((((.((.....((.(((......))))))).))))..-.))))).))))..))).))) ( -28.50) >DroEre_CAF1 13559 111 - 1 AACUUGGAC-------AGAGAGAGCUCUCAGCCAGAACUGAUUGGAAAUCAUAAGUGAAAGGCCGGACUGCAGAACUUGAUUUAAAGACUCUGGCCAA-AGGUUCUUGGGAUUCUUUCC .........-------.(((((((.(((((...((((((.........(((....)))..(((((((((..(((......)))..))..)))))))..-.)))))))))))))))))). ( -29.30) >DroYak_CAF1 14198 119 - 1 AACUUGGACAGAGGACAGAGAGAGCUCUCAGCCAGAACUGAUUGGAAAUCAUAAGUGAAAGGCCGGACUGUGGAACUUGAUUUAAAGACUCUGGCCAAAAGGUUCUUGGGAUUCUUUCC .....(((.((((....((((....))))..((((((((.........(((....)))..(((((((((.((((......)))).))..)))))))....))))).)))..)))).))) ( -30.90) >consensus AACUUGGAC_______AGAGAGAGCUCUCACCCAGAACUGAUUGGAAAUCAUAAAUGAAAGGCCGGACUGCAGAACUUGAUUUAAAGACUCUGGCCAA_AGGUUCUUGGGAUUCUUUCC .................(((((((.(((((...((((((.........(((....)))..((((((((....)..(((......)))..)))))))....)))))))))))))))))). (-27.22 = -27.50 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:53 2006