Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,165,926 – 1,166,035 |
Length | 109 |
Max. P | 0.984522 |
Location | 1,165,926 – 1,166,035 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.32 |
Mean single sequence MFE | -31.52 |
Consensus MFE | -21.48 |
Energy contribution | -21.16 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.15 |
Mean z-score | -3.13 |
Structure conservation index | 0.68 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.876549 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1165926 109 + 22224390 GACAGCCGAACUGUCUA------UCGAACAACUUAAUUAGCUCUGGCAAAUCAGCCGCACACAACAGAC-----AAUUGUUAGUCCGCUCGAUAAGUUGUUCGGCAACAUGCACAUAGCC (((((.....)))))..------.(((((((((((.(.(((...(((......)))..........(((-----........))).))).).)))))))))))((.....))........ ( -30.60) >DroSec_CAF1 1995 115 + 1 AACAGUCGAACUGUCUAGUGUAAUCGAACAACUUAAUUAGCUCCGGAAAAUCAGCCGCACACAACAGAC-----AAUUGUUAGUCCGCUCAAUAAGUUGUUCGGAAACAUGCACAUAGCC .((((.....))))((((((((...((((((((((.(.(((..(((........))).........(((-----........))).))).).))))))))))(....).))))).))).. ( -30.00) >DroSim_CAF1 2598 115 + 1 AACAGUCGAACUGUCUAGUGUAAUCGAACAACUUAAUUAGCUCCGGCAAAUCAGCCGCACACAACAGAC-----AAUUGUUAGUCCGCUCAAUAAGUUGUUCGGAAACAUGCACAUAGCC .((((.....))))((((((((...((((((((((.(.(((..((((......)))).........(((-----........))).))).).))))))))))(....).))))).))).. ( -33.80) >DroEre_CAF1 1041 120 + 1 AACUGCCGAACAGUCUAGUAUAAUCGAACAACUUAAUUAGCUCUGGCAAAUCAGCCGCAAACAACGGACAAUACAAUUGUUAGUCCACUCAAUAAGUUGUUCGGAAACAUGCACAUAGCC .((((.....))))...((((....((((((((((....((...(((......))))).......((((((((....)))).))))......))))))))))(....)))))........ ( -30.00) >DroYak_CAF1 3238 115 + 1 AACAGCCGAACAGUCUAGUAUGAUCGAACAACUUAAUUAGCUCUGGCAAAUGAGCCGCAAACAACGGAC-----AAUUGUUGGUGCACUCGAUAAGUUGUUCGAAAACAUGCACAUAGCC .................(((((.((((((((((((....((.(..((((.((..(((.......))).)-----).))))..).))......))))))))))))...)))))........ ( -33.20) >consensus AACAGCCGAACUGUCUAGUAUAAUCGAACAACUUAAUUAGCUCUGGCAAAUCAGCCGCACACAACAGAC_____AAUUGUUAGUCCGCUCAAUAAGUUGUUCGGAAACAUGCACAUAGCC .((((.....)))).........((((((((((((.(.(((..((((......))))...(((((((.........))))).))..))).).))))))))))))......((.....)). (-21.48 = -21.16 + -0.32)
Location | 1,165,926 – 1,166,035 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.32 |
Mean single sequence MFE | -35.48 |
Consensus MFE | -29.84 |
Energy contribution | -29.56 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.14 |
Mean z-score | -2.15 |
Structure conservation index | 0.84 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984522 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1165926 109 - 22224390 GGCUAUGUGCAUGUUGCCGAACAACUUAUCGAGCGGACUAACAAUU-----GUCUGUUGUGUGCGGCUGAUUUGCCAGAGCUAAUUAAGUUGUUCGA------UAGACAGUUCGGCUGUC (((.((......)).)))((((((((((...((((.(((((((...-----...))))).)).)(((......)))...)))...))))))))))..------..(((((.....))))) ( -37.90) >DroSec_CAF1 1995 115 - 1 GGCUAUGUGCAUGUUUCCGAACAACUUAUUGAGCGGACUAACAAUU-----GUCUGUUGUGUGCGGCUGAUUUUCCGGAGCUAAUUAAGUUGUUCGAUUACACUAGACAGUUCGACUGUU .((.....)).(((...(((((((((((...(((((((........-----)))))))....((..(((......))).))....)))))))))))...)))...(((((.....))))) ( -33.00) >DroSim_CAF1 2598 115 - 1 GGCUAUGUGCAUGUUUCCGAACAACUUAUUGAGCGGACUAACAAUU-----GUCUGUUGUGUGCGGCUGAUUUGCCGGAGCUAAUUAAGUUGUUCGAUUACACUAGACAGUUCGACUGUU .((.....)).(((...(((((((((((...(((((((........-----))))........((((......))))..)))...)))))))))))...)))...(((((.....))))) ( -37.30) >DroEre_CAF1 1041 120 - 1 GGCUAUGUGCAUGUUUCCGAACAACUUAUUGAGUGGACUAACAAUUGUAUUGUCCGUUGUUUGCGGCUGAUUUGCCAGAGCUAAUUAAGUUGUUCGAUUAUACUAGACUGUUCGGCAGUU .((.....)).......(((((((((((...(((((((..((....))...)))).........(((......)))...)))...))))))))))).........(((((.....))))) ( -34.30) >DroYak_CAF1 3238 115 - 1 GGCUAUGUGCAUGUUUUCGAACAACUUAUCGAGUGCACCAACAAUU-----GUCCGUUGUUUGCGGCUCAUUUGCCAGAGCUAAUUAAGUUGUUCGAUCAUACUAGACUGUUCGGCUGUU ((((....(((.((((((((((((((((...((((((..((((((.-----....)))))))))(((......)))...)))...)))))))))))).......)))))))..))))... ( -34.91) >consensus GGCUAUGUGCAUGUUUCCGAACAACUUAUUGAGCGGACUAACAAUU_____GUCUGUUGUGUGCGGCUGAUUUGCCAGAGCUAAUUAAGUUGUUCGAUUACACUAGACAGUUCGGCUGUU .((.....)).......(((((((((((...(((((((.............)))).........(((......)))...)))...))))))))))).........(((((.....))))) (-29.84 = -29.56 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:23 2006