Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,476,663 – 10,476,774 |
Length | 111 |
Max. P | 0.994006 |
Location | 10,476,663 – 10,476,774 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 94.24 |
Mean single sequence MFE | -23.87 |
Consensus MFE | -21.40 |
Energy contribution | -21.64 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.91 |
Structure conservation index | 0.90 |
SVM decision value | 2.44 |
SVM RNA-class probability | 0.994006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10476663 111 + 22224390 AAAUUUUGUUGUACUCGAAUUCCCAACUGGCCAACUAAACCAGAGUUGGAAUUCGCAAUUGGCA-GCCAGAAGCCAAAACUGAACAGAAAACCAAACAGCAGCUACCAG------AAA .....(((((((...((((((((...((((.........))))....))))))))...(((((.-.......)))))..................))))))).......------... ( -25.80) >DroSec_CAF1 7512 118 + 1 AAAUUUUGUUGUACUCGAAUUCCCAACUGGCCAACUAAACCAUAGUUGGAAUACGCAAUUGGCAAGCCAGAAGCCAAAACUGAACAGAAAACAAAACAGCAGCUGCCAGACAAAGAAA ...((((((.......(......)..(((((((((((.....))))))......((..(((((.........)))))..((....))...........))....)))))))))))... ( -21.80) >DroSim_CAF1 7698 118 + 1 AAAUUUUGUUGUACUCGAAUUCCCAACUGGCCAACUAAACCAUAGUUGGAAUUCGCAAUUGGCAAGCCAGAAGCCAAAACUGAACAGAAAACAAAACAGCAGCUGCCAGACAAAGAAA ...(((((((.....((((((((.(((((.............)))))))))))))....(((((.(((((.........)))....(....).........))))))))))))))... ( -24.22) >DroEre_CAF1 8752 118 + 1 AAAUUUUGUUGUACUCGAAUUCCCAACUGGCCAACUAAACCAGAGUUGGAAUUUGCAAUUGGAAGGCCAGAAGCCAAAACUGAACAGAAAACAAAACAGCAGCUACCAGACAAAGAAA ...(((((((.....((((((((...((((.........))))....))))))))....(((..(((.....)))....(((..............)))......))))))))))... ( -22.04) >DroYak_CAF1 9273 118 + 1 UAAUUUUGUUGUACUCGAAUUCCCAACUGGCCAACUAAACCAGAGUUGGAAUUCGCAAUUGGCAGGCCAGACGCCAAAACUGAACAGAAAACAAAACAGCAGCUACCAGACAAAGAAA .....(((((((...((((((((...((((.........))))....))))))))...(((((.(......))))))..................)))))))................ ( -25.50) >consensus AAAUUUUGUUGUACUCGAAUUCCCAACUGGCCAACUAAACCAGAGUUGGAAUUCGCAAUUGGCAAGCCAGAAGCCAAAACUGAACAGAAAACAAAACAGCAGCUACCAGACAAAGAAA .....(((((((...((((((((.((((((.........))..))))))))))))...(((((.........)))))..................)))))))................ (-21.40 = -21.64 + 0.24)
Location | 10,476,663 – 10,476,774 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 94.24 |
Mean single sequence MFE | -29.90 |
Consensus MFE | -25.14 |
Energy contribution | -26.10 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.03 |
Mean z-score | -1.46 |
Structure conservation index | 0.84 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751277 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10476663 111 - 22224390 UUU------CUGGUAGCUGCUGUUUGGUUUUCUGUUCAGUUUUGGCUUCUGGC-UGCCAAUUGCGAAUUCCAACUCUGGUUUAGUUGGCCAGUUGGGAAUUCGAGUACAACAAAAUUU ...------.((((((((((((..(((....)))..))))..........)))-)))))....((((((((....((((((.....))))))...))))))))............... ( -34.90) >DroSec_CAF1 7512 118 - 1 UUUCUUUGUCUGGCAGCUGCUGUUUUGUUUUCUGUUCAGUUUUGGCUUCUGGCUUGCCAAUUGCGUAUUCCAACUAUGGUUUAGUUGGCCAGUUGGGAAUUCGAGUACAACAAAAUUU ....((((((((((((..((......))...))).)))).(((((.(((..(((.((((((((......(((....)))..)))))))).)))..)))..)))))....))))).... ( -27.60) >DroSim_CAF1 7698 118 - 1 UUUCUUUGUCUGGCAGCUGCUGUUUUGUUUUCUGUUCAGUUUUGGCUUCUGGCUUGCCAAUUGCGAAUUCCAACUAUGGUUUAGUUGGCCAGUUGGGAAUUCGAGUACAACAAAAUUU ....(((((.((((((((((((..(((.........)))...))))....))).)))))....((((((((.....(((((.....)))))....))))))))......))))).... ( -30.40) >DroEre_CAF1 8752 118 - 1 UUUCUUUGUCUGGUAGCUGCUGUUUUGUUUUCUGUUCAGUUUUGGCUUCUGGCCUUCCAAUUGCAAAUUCCAACUCUGGUUUAGUUGGCCAGUUGGGAAUUCGAGUACAACAAAAUUU ....(((((...(((((.((((..(........)..))))...(((.....)))........)).((((((....((((((.....))))))...))))))....))).))))).... ( -24.60) >DroYak_CAF1 9273 118 - 1 UUUCUUUGUCUGGUAGCUGCUGUUUUGUUUUCUGUUCAGUUUUGGCGUCUGGCCUGCCAAUUGCGAAUUCCAACUCUGGUUUAGUUGGCCAGUUGGGAAUUCGAGUACAACAAAAUUA ....(((((.(((((...((((..(........)..))))...(((.....))))))))....((((((((....((((((.....))))))...))))))))......))))).... ( -32.00) >consensus UUUCUUUGUCUGGUAGCUGCUGUUUUGUUUUCUGUUCAGUUUUGGCUUCUGGCCUGCCAAUUGCGAAUUCCAACUCUGGUUUAGUUGGCCAGUUGGGAAUUCGAGUACAACAAAAUUU ...........(((....)))((((((((..((........(((((.........)))))...((((((((....((((((.....))))))...))))))))))...)))))))).. (-25.14 = -26.10 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:41 2006