Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,473,843 – 10,474,000 |
Length | 157 |
Max. P | 0.537039 |
Location | 10,473,843 – 10,473,962 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.85 |
Mean single sequence MFE | -23.54 |
Consensus MFE | -17.16 |
Energy contribution | -17.32 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.59 |
Structure conservation index | 0.73 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10473843 119 - 22224390 CGACAAGUGGCGGUCAAUUUGAAUUGACAUUCAAUUUUAGUCUGGCAAUGUCAAUUCAAAGCAGAAAGCAAAUAAAUAUGUACACAAUUAAUUAAUGAAACAAGAUUUAAAAUAUCGCC- ........((((((...(((((((((((((((............).))))))))))))))((.....))............................................))))))- ( -22.30) >DroSec_CAF1 4722 119 - 1 CGACAAGUGGCGGUCAAUUUGAAUUGACAUUCAAUUUUAGCCUGGCAAUGUCAAUUCAAAGCAAGAAGCAAAUAAAAAUGUACACAAUUAAUUAAAGAAUUAAGAUUUAAAAUCUUGCC- .(((........)))..(((((((((((((((............).))))))))))))))((((((.(((........)))......((((((....)))))).........)))))).- ( -24.70) >DroSim_CAF1 4854 119 - 1 CGACAAGUGGCGGUCAAUUUGAAUUGACAUUCAAUUUUAGCCUGGCAAUGUCAAUUCAAAGCAAGAAGCAAAUAAAAAUGUACACAAUUAAUUAAAGAAUUAAGAUUUAAAAUCUCGCC- ........((((((((.(((((((((((((((............).))))))))))))))((.....)).........)).))....((((((....))))))............))))- ( -22.30) >DroEre_CAF1 5825 118 - 1 CGACAAGUGGCGGUCAAUUUGAAUGGGCAUUCCAAUUGAGCCUGGCAAUGUCAAUUCAAAGCAGGCAGCAAAUAAA-CUCUCCACAAUUAAUCAAAAAAUCAAGAUUUAAAAUGUCAGC- .((((.((((.((....(((((((.(((((((((........))).)))))).)))))))((.....)).......-.)).))))....((((..........)))).....))))...- ( -26.50) >DroYak_CAF1 6354 119 - 1 CGACAAGUGGCGGUCAAUUUGAAUGGGCAUUCAAUUUGAGCCUGGCAAUGUCAAUUCAAAGCAUGUAGCAUUUAAA-CCGUACACAUUUAAUUAAAGAAUCAAGAUUUAAAAGUACCCCU ......((((((((....(((((((.((((....((((((..((((...)))).))))))..))))..))))))))-)))).)))................................... ( -21.90) >consensus CGACAAGUGGCGGUCAAUUUGAAUUGACAUUCAAUUUUAGCCUGGCAAUGUCAAUUCAAAGCAAGAAGCAAAUAAA_AUGUACACAAUUAAUUAAAGAAUCAAGAUUUAAAAUCUCGCC_ ......(((........(((((((((((((((............).))))))))))))))((.....)).............)))................................... (-17.16 = -17.32 + 0.16)
Location | 10,473,882 – 10,474,000 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.14 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -18.58 |
Energy contribution | -20.83 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.07 |
Mean z-score | -1.23 |
Structure conservation index | 0.68 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10473882 118 - 22224390 AAAAUUAAAGAGAGCGAGAGUGGCGCAUGUGG--GGAACGCGACAAGUGGCGGUCAAUUUGAAUUGACAUUCAAUUUUAGUCUGGCAAUGUCAAUUCAAAGCAGAAAGCAAAUAAAUAUG .............((..((.((.(((.(((.(--......).))).))).)).))..(((((((((((((((............).)))))))))))))))).................. ( -28.80) >DroSec_CAF1 4761 118 - 1 AAAAUUAAAGAGAGCGAGAGUGGCGCAUGUGG--GGAACGCGACAAGUGGCGGUCAAUUUGAAUUGACAUUCAAUUUUAGCCUGGCAAUGUCAAUUCAAAGCAAGAAGCAAAUAAAAAUG .............((..((.((.(((.(((.(--......).))).))).)).))..(((((((((((((((............).)))))))))))))))).................. ( -28.80) >DroSim_CAF1 4893 118 - 1 AACAUUAAAGAGAGCGAGAGUGGCGCAUGUGG--GGAACGCGACAAGUGGCGGUCAAUUUGAAUUGACAUUCAAUUUUAGCCUGGCAAUGUCAAUUCAAAGCAAGAAGCAAAUAAAAAUG .............((..((.((.(((.(((.(--......).))).))).)).))..(((((((((((((((............).)))))))))))))))).................. ( -28.80) >DroEre_CAF1 5864 117 - 1 AGAGUCAAAGAGAGCGAGAGUGGCGCAUGUGA--GGAACGCGACAAGUGGCGGUCAAUUUGAAUGGGCAUUCCAAUUGAGCCUGGCAAUGUCAAUUCAAAGCAGGCAGCAAAUAAA-CUC .((((........((....)).((((.(((..--.((.(((.(....).))).))..(((((((.(((((((((........))).)))))).)))))))))).)).))......)-))) ( -30.80) >DroYak_CAF1 6394 117 - 1 AGAGCCAAAGAGAGCGAGAGUGGCGCAUGUGG--GGAACGCGACAAGUGGCGGUCAAUUUGAAUGGGCAUUCAAUUUGAGCCUGGCAAUGUCAAUUCAAAGCAUGUAGCAUUUAAA-CCG ...(((.......((....)))))((((((..--.(((...((((..((.(((((((.((((((....)))))).)))).)).).)).))))..)))...))))))..........-... ( -30.51) >DroAna_CAF1 4030 98 - 1 GAGAGCGAAGAGAGAGAGAGUGGCGCAUGUGAAGAGAGUGCGACAAGUGGCGGUCAAUUUGAAUUU-UAUU------UUGUUUGAAAACUUUGA--------------CAAAAAAA-GUC ..((((((((.((((..((((.((((...........))))(((........))).))))...)))-).))------))))))....(((((..--------------.....)))-)). ( -16.10) >consensus AAAAUCAAAGAGAGCGAGAGUGGCGCAUGUGG__GGAACGCGACAAGUGGCGGUCAAUUUGAAUUGACAUUCAAUUUUAGCCUGGCAAUGUCAAUUCAAAGCAAGAAGCAAAUAAA_AUG .............((..((.((.(((.(((.(........).))).))).)).))..((((((((((((((...............)))))))))))))).......))........... (-18.58 = -20.83 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:36 2006