Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,473,607 – 10,473,716 |
Length | 109 |
Max. P | 0.999642 |
Location | 10,473,607 – 10,473,716 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 93.14 |
Mean single sequence MFE | -21.66 |
Consensus MFE | -17.82 |
Energy contribution | -18.22 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.12 |
Mean z-score | -2.76 |
Structure conservation index | 0.82 |
SVM decision value | 2.76 |
SVM RNA-class probability | 0.996869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10473607 109 + 22224390 AAAUUUU-UAUUAUUUUGACUUUCCUCUUCACCCUUGUCAUCGUGCAAGCGUUCUUUUGCCCUUCGAAAUGUCAAAAUAUUGCAGACAAAAGUCUGUGCUCUGCACAACA .......-...(((((((((((((..........((((......))))(((......))).....)))).)))))))))..((((((....))))))............. ( -20.70) >DroSec_CAF1 4494 109 + 1 AAAUUUU-UAUUAUUUUGACUUUCCCCUUCACCCUUGUCAUCCAGCAAGCGUUCUUUUGCCCUUCGUAAUGUCAAAAUAUUGCAGACAAAAGUCUGUGCUCCGCACAACA .......-...(((((((((..........((.(((((......))))).))....((((.....)))).)))))))))..((((((....))))))............. ( -20.30) >DroSim_CAF1 4626 109 + 1 AAAUUUU-UAUUAUUUUGACUUUCCCCUUCACCCUUGUCAUCUGGCAAGCGUUCUUUUGCCCUUCGUAAUGUCAAAAUAUUGCAGACAAAAGUCUGUGCUCCGCACAACA .......-...(((((((((..........((.((((((....)))))).))....((((.....)))).)))))))))..((((((....))))))............. ( -23.20) >DroEre_CAF1 5596 109 + 1 AAAUUUU-UAUUAUUUUGACUUUUCCCUUCACCCUCGUCUCCUCACAAGCGUUCAUUUGCCCUUCGAAAUGUCAAAAUAUUGCAGACAAAAGUCUGCGCUCCGCACAACA .......-...(((((((((.((((...........((......))..(((......))).....)))).)))))))))..((((((....))))))............. ( -21.90) >DroYak_CAF1 6123 110 + 1 AAAUUUUGUAUUAUUUUGACUUUUCCCUUCACCCCUGUCACCUCCCAAGCGUUCUUUUGCCCUUCGAAAUGUCAAAAUAUUGCAGACAAAAGUCUGCGCUCCGCACAACA .....((((..(((((((((.((((..........((........)).(((......))).....)))).)))))))))..((((((....)))))).......)))).. ( -22.20) >consensus AAAUUUU_UAUUAUUUUGACUUUCCCCUUCACCCUUGUCAUCUCGCAAGCGUUCUUUUGCCCUUCGAAAUGUCAAAAUAUUGCAGACAAAAGUCUGUGCUCCGCACAACA ...........(((((((((((((..........((((......))))(((......))).....)))).)))))))))..((((((....))))))............. (-17.82 = -18.22 + 0.40)
Location | 10,473,607 – 10,473,716 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 93.14 |
Mean single sequence MFE | -27.76 |
Consensus MFE | -26.12 |
Energy contribution | -25.16 |
Covariance contribution | -0.96 |
Combinations/Pair | 1.18 |
Mean z-score | -2.20 |
Structure conservation index | 0.94 |
SVM decision value | 3.82 |
SVM RNA-class probability | 0.999642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10473607 109 - 22224390 UGUUGUGCAGAGCACAGACUUUUGUCUGCAAUAUUUUGACAUUUCGAAGGGCAAAAGAACGCUUGCACGAUGACAAGGGUGAAGAGGAAAGUCAAAAUAAUA-AAAAUUU ...(((((...)))))(((((((.(((((....((((((....)))))).))......((.(((((.....).)))).))..))).))))))).........-....... ( -26.90) >DroSec_CAF1 4494 109 - 1 UGUUGUGCGGAGCACAGACUUUUGUCUGCAAUAUUUUGACAUUACGAAGGGCAAAAGAACGCUUGCUGGAUGACAAGGGUGAAGGGGAAAGUCAAAAUAAUA-AAAAUUU ...(((((...)))))(((((((.(((.((...(((((.((((.....((((........))))....)))).))))).)).))).))))))).........-....... ( -27.00) >DroSim_CAF1 4626 109 - 1 UGUUGUGCGGAGCACAGACUUUUGUCUGCAAUAUUUUGACAUUACGAAGGGCAAAAGAACGCUUGCCAGAUGACAAGGGUGAAGGGGAAAGUCAAAAUAAUA-AAAAUUU ...(((((...)))))(((((((.(((.((...(((((.((((......(((((........))))).)))).))))).)).))).))))))).........-....... ( -27.50) >DroEre_CAF1 5596 109 - 1 UGUUGUGCGGAGCGCAGACUUUUGUCUGCAAUAUUUUGACAUUUCGAAGGGCAAAUGAACGCUUGUGAGGAGACGAGGGUGAAGGGAAAAGUCAAAAUAAUA-AAAAUUU .(((......)))((((((....))))))..(((((((((.(((((.....)......((.(((((......))))).)).....)))).)))))))))...-....... ( -27.70) >DroYak_CAF1 6123 110 - 1 UGUUGUGCGGAGCGCAGACUUUUGUCUGCAAUAUUUUGACAUUUCGAAGGGCAAAAGAACGCUUGGGAGGUGACAGGGGUGAAGGGAAAAGUCAAAAUAAUACAAAAUUU ..(((((......((((((....))))))..(((((((((.((((...((((........))))....(....)...........)))).))))))))).)))))..... ( -29.70) >consensus UGUUGUGCGGAGCACAGACUUUUGUCUGCAAUAUUUUGACAUUUCGAAGGGCAAAAGAACGCUUGCGAGAUGACAAGGGUGAAGGGGAAAGUCAAAAUAAUA_AAAAUUU ...(((((...)))))(((((((.(((((....(((((......))))).))......((.((((........)))).))..))).)))))))................. (-26.12 = -25.16 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:34 2006