Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,464,252 – 10,464,361 |
Length | 109 |
Max. P | 0.669212 |
Location | 10,464,252 – 10,464,361 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.26 |
Mean single sequence MFE | -38.67 |
Consensus MFE | -26.26 |
Energy contribution | -28.14 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.07 |
Mean z-score | -1.74 |
Structure conservation index | 0.68 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669212 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10464252 109 + 22224390 CGUGUGAAGCAAAAAGGAAAAACUGAAAA----CUGACAGAGCUGUCACUGCCAACGUCGA------CGCAGACGCCGACUGCGACUGCGACAGCGACAGCGAUGGAGGCGCU-ACGCGA (((((..(((...................----.(((((....)))))..(((..((((..------(((((.(((.....))).)))))...((....))))))..))))))-))))). ( -38.20) >DroSec_CAF1 8558 109 + 1 CGUGUGAAGCAAAAAGGAAAAACUGAAAA----CUGGCGGAGCUGUCACUGUCCACGUCGA------CGCAGACGCCGACUGCGACUGCGACAGCGACAGCGAUGGAGGAGCA-ACGCGA (((((...((....((......)).....----((..((..((((((.(((((...(....------)((((.(((.....))).))))))))).))))))..))..)).)).-))))). ( -38.20) >DroSim_CAF1 8529 103 + 1 CGUGUGAAGCAAAAAGGAAAAACUGAAAA----CUGGCGGAGCUGUCACUGUCCACCUCGA------CGCCGACGCCGACU------GCGACAGCGACAGCGAUGGAGGAGCA-ACGCGA (((((...((....((......)).....----((..((..((((((.(((((((..(((.------((....)).))).)------).))))).))))))..))..)).)).-))))). ( -33.50) >DroYak_CAF1 8768 120 + 1 CGUUUGGGCCAAAAAGGAAAAACUGAAUAUCUGCUGACGGAGCUGUCGCUGUACACGUCGACGUAGACGCAGACGCCGACGCCGACGCCGACUGCGACAGCGACGGAGGGGCAAACGCGA (((.(..(((....((......)).........((..((..((((((((.((...(((((.(((....((....))..))).)))))...)).))))))))..))..)))))..).))). ( -44.80) >consensus CGUGUGAAGCAAAAAGGAAAAACUGAAAA____CUGACGGAGCUGUCACUGUCCACGUCGA______CGCAGACGCCGACUGCGACUGCGACAGCGACAGCGAUGGAGGAGCA_ACGCGA (((((...((....((......)).........((..((..((((((.(((((...((((........((....))......))))...))))).))))))..))..)).))..))))). (-26.26 = -28.14 + 1.88)
Location | 10,464,252 – 10,464,361 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.26 |
Mean single sequence MFE | -40.48 |
Consensus MFE | -23.92 |
Energy contribution | -25.04 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.96 |
Structure conservation index | 0.59 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559318 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10464252 109 - 22224390 UCGCGU-AGCGCCUCCAUCGCUGUCGCUGUCGCAGUCGCAGUCGGCGUCUGCG------UCGACGUUGGCAGUGACAGCUCUGUCAG----UUUUCAGUUUUUCCUUUUUGCUUCACACG ..(.(.-(((.........((((((((((((((....)).(((((((....))------)))))...)))))))))))).(((....----....)))............))).).)... ( -40.80) >DroSec_CAF1 8558 109 - 1 UCGCGU-UGCUCCUCCAUCGCUGUCGCUGUCGCAGUCGCAGUCGGCGUCUGCG------UCGACGUGGACAGUGACAGCUCCGCCAG----UUUUCAGUUUUUCCUUUUUGCUUCACACG ..(((.-((......))..((((((((((((((....)).(((((((....))------)))))...))))))))))))..)))...----............................. ( -37.60) >DroSim_CAF1 8529 103 - 1 UCGCGU-UGCUCCUCCAUCGCUGUCGCUGUCGC------AGUCGGCGUCGGCG------UCGAGGUGGACAGUGACAGCUCCGCCAG----UUUUCAGUUUUUCCUUUUUGCUUCACACG ..(((.-((......))..((((((((((((((------..((((((....))------)))).)).))))))))))))..)))...----............................. ( -33.60) >DroYak_CAF1 8768 120 - 1 UCGCGUUUGCCCCUCCGUCGCUGUCGCAGUCGGCGUCGGCGUCGGCGUCUGCGUCUACGUCGACGUGUACAGCGACAGCUCCGUCAGCAGAUAUUCAGUUUUUCCUUUUUGGCCCAAACG ....((((((.....((..((((((((.((..((((((((((.((((....)))).))))))))))..)).))))))))..))...)))))).....((((..((.....))...)))). ( -49.90) >consensus UCGCGU_UGCUCCUCCAUCGCUGUCGCUGUCGCAGUCGCAGUCGGCGUCUGCG______UCGACGUGGACAGUGACAGCUCCGCCAG____UUUUCAGUUUUUCCUUUUUGCUUCACACG ..((....)).........((((((((((((...((((.......((....)).......))))...))))))))))))......................................... (-23.92 = -25.04 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:31 2006