Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,460,295 – 10,460,389 |
Length | 94 |
Max. P | 0.994235 |
Location | 10,460,295 – 10,460,389 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 94.53 |
Mean single sequence MFE | -37.33 |
Consensus MFE | -35.09 |
Energy contribution | -35.40 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -3.21 |
Structure conservation index | 0.94 |
SVM decision value | 2.46 |
SVM RNA-class probability | 0.994235 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10460295 94 + 22224390 GGCAAUGUGGGGCAA-GGGAGGAAAAUUCGCGACGCAUUCACGUUGCAAGGAUACGAAGGAACCUCCCAAGCACUUGUGUGUGCGUGCAACCCAC ......((((((((.-((((((....(((((((((......))))))..(....))))....))))))..((((......)))).)))..))))) ( -37.90) >DroSec_CAF1 4775 94 + 1 GGCAAUGUGGGGCAA-GGGAGGAAAAUUCGCGACGCAUUCACGUUGCAAGGAUACGAAGGAAACUCCCAAGCACUUGUGUGUGCGUGCAACCCAC ......((((((((.-(((((.....(((((((((......))))))..(....)))).....)))))..((((......)))).)))..))))) ( -35.50) >DroSim_CAF1 4543 94 + 1 GGCAAUGUGGGGCAA-GGGAGGAAAAUUCGCGACGCAUUCACGUUGCAAGGAUACGAAGGAAACUCCCAAGCACUUGUGUGUGCGUGCAACCCAC ......((((((((.-(((((.....(((((((((......))))))..(....)))).....)))))..((((......)))).)))..))))) ( -35.50) >DroYak_CAF1 4713 90 + 1 G-----GUGGGGCAAUGGGAGGUAAAUUCGCGGCGCAUUCACGUUGCAAGGAUACGAAGGAACCUCCCAAGCACUUGUGAGUGCGUGCAACCCAC .-----((((((((.((((((((...(((((((((......))))))..(....))))...)))))))).(((((....))))).)))..))))) ( -40.40) >consensus GGCAAUGUGGGGCAA_GGGAGGAAAAUUCGCGACGCAUUCACGUUGCAAGGAUACGAAGGAAACUCCCAAGCACUUGUGUGUGCGUGCAACCCAC ......((((((((..((((((....(((((((((......))))))..(....))))....))))))..((((......)))).)))..))))) (-35.09 = -35.40 + 0.31)
Location | 10,460,295 – 10,460,389 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 94.53 |
Mean single sequence MFE | -33.20 |
Consensus MFE | -30.50 |
Energy contribution | -31.00 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.69 |
Structure conservation index | 0.92 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986520 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10460295 94 - 22224390 GUGGGUUGCACGCACACACAAGUGCUUGGGAGGUUCCUUCGUAUCCUUGCAACGUGAAUGCGUCGCGAAUUUUCCUCCC-UUGCCCCACAUUGCC (((((..(((.((((......))))..((((((....(((((.....((((.......))))..)))))....))))))-.))))))))...... ( -34.60) >DroSec_CAF1 4775 94 - 1 GUGGGUUGCACGCACACACAAGUGCUUGGGAGUUUCCUUCGUAUCCUUGCAACGUGAAUGCGUCGCGAAUUUUCCUCCC-UUGCCCCACAUUGCC (((((..(((.((((......))))..(((((........(((....)))..(((((.....))))).......)))))-.))))))))...... ( -30.80) >DroSim_CAF1 4543 94 - 1 GUGGGUUGCACGCACACACAAGUGCUUGGGAGUUUCCUUCGUAUCCUUGCAACGUGAAUGCGUCGCGAAUUUUCCUCCC-UUGCCCCACAUUGCC (((((..(((.((((......))))..(((((........(((....)))..(((((.....))))).......)))))-.))))))))...... ( -30.80) >DroYak_CAF1 4713 90 - 1 GUGGGUUGCACGCACUCACAAGUGCUUGGGAGGUUCCUUCGUAUCCUUGCAACGUGAAUGCGCCGCGAAUUUACCUCCCAUUGCCCCAC-----C (((((..(((.(((((....))))).((((((((...(((((.....((((.......))))..)))))...)))))))).))))))))-----. ( -36.60) >consensus GUGGGUUGCACGCACACACAAGUGCUUGGGAGGUUCCUUCGUAUCCUUGCAACGUGAAUGCGUCGCGAAUUUUCCUCCC_UUGCCCCACAUUGCC (((((..(((.((((......))))..((((((....(((((.....((((.......))))..)))))....))))))..))))))))...... (-30.50 = -31.00 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:29 2006