Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,165,301 – 1,165,421 |
Length | 120 |
Max. P | 0.695120 |
Location | 1,165,301 – 1,165,421 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.89 |
Mean single sequence MFE | -48.97 |
Consensus MFE | -47.58 |
Energy contribution | -47.57 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 0.97 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695120 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1165301 120 + 22224390 GCUGGCAGCGCAUUGAACGCUCGCCGCUCAAGACGUGCCCACGGCAGCGGCGACUUGGCCAAAAGCAACACGACGAGCACGAGCACGUCGCCGCGGCAAGCCGAAGAAGUUGGCCAAGAC .......(((.......)))((((((((.....(((....)))..))))))))(((((((((...(....(((((.((....)).)))))...(((....)))..)...))))))))).. ( -48.30) >DroSec_CAF1 1391 117 + 1 GCUGGCAGCGCAUUGAACGCUCGCCGCUCAAGACGUGCCCACGGCAGCGGCGACUUGGCCAAAAGCAACACGACGAGCACGAGCACGUCG---CGGCGAGCCGAAGAAGUUGGCCAAGAC .......(((.......)))((((((((.....(((....)))..))))))))(((((((((...(....(((((.((....)).)))))---(((....)))..)...))))))))).. ( -48.30) >DroSim_CAF1 1993 117 + 1 GCUGGCAGCGCAUUGAACGCUCGCCGCUCAAGACGUGCCCACGGCAGCGGCGACUUGGCCAAAAGCAACACGACGAGCACGAGCACGUCG---CGGCGAGCCGAAGAAGUUGGCCAAGAC .......(((.......)))((((((((.....(((....)))..))))))))(((((((((...(....(((((.((....)).)))))---(((....)))..)...))))))))).. ( -48.30) >DroEre_CAF1 387 117 + 1 GCUGGCAGCGCAUUGAACGCUCGCCGCUCAAGACGUGCCCACGGCAGCGGCGACUUGGCCAACAGCAACACGACGAGCACGAGCACGUCG---CGGCGAGCCGAAGAAGUUGGCCAAGAC .......(((.......)))((((((((.....(((....)))..))))))))((((((((((.......(((((.((....)).)))))---(((....))).....)))))))))).. ( -51.00) >consensus GCUGGCAGCGCAUUGAACGCUCGCCGCUCAAGACGUGCCCACGGCAGCGGCGACUUGGCCAAAAGCAACACGACGAGCACGAGCACGUCG___CGGCGAGCCGAAGAAGUUGGCCAAGAC .......(((.......)))((((((((.....(((....)))..))))))))(((((((((...(....(((((.((....)).)))))...(((....)))..)...))))))))).. (-47.58 = -47.57 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:21 2006