| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,459,856 – 10,459,954 |
| Length | 98 |
| Max. P | 0.734205 |
| Location | 10,459,856 – 10,459,954 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.83 |
| Mean single sequence MFE | -34.57 |
| Consensus MFE | -22.11 |
| Energy contribution | -22.67 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.734205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10459856 98 + 22224390 CAAGG-------------ACUUUCUCUGUUCGAUUUUGGAGAUACAUAGGCAGACACCUUAUGUUGCCGCAUGUGGUGCAACGUGUUCUGCAGUGAUGAUCGAAUCGAGAG--------- .....-------------....((((.(((((((((((.(((.((((.(((((.((.....)))))))((((...))))...))))))).)))....)))))))).)))).--------- ( -29.80) >DroSec_CAF1 4319 117 + 1 CAAGGACC-UCUUUCAGGACUUUCUGUGUUCGAUUCUGGAAAUACAUAGACAGACACCUUAUGUUGCCGCAUGUGGUGCAACGUGUUCUGCAGUGAUGAUCGAAUCGAGAG--AGGCUCC ...(((((-((((((.((((.......))))(((((.((..((.(((.(.((((.....((((((((.((.....)))))))))).))))).)))))..))))))))))))--))).))) ( -38.00) >DroYak_CAF1 4274 116 + 1 CAAUGCCUUUCUUUUAGGACUUUCUCUGUUCGAUUUUGGAAAUACAUAG----ACACCUUAUGUUCUUGCAUGUGGUGCAACGUGUUCUGCACUGAUGAUCGAAUCGAGAGAGAGGCUCC ....((((.(((....)))(((((((.(((((((((..(....((((..----.((((.(((((....))))).))))....))))......)..).)))))))).)))))))))))... ( -35.90) >consensus CAAGG_C__UCUUU_AGGACUUUCUCUGUUCGAUUUUGGAAAUACAUAG_CAGACACCUUAUGUUGCCGCAUGUGGUGCAACGUGUUCUGCAGUGAUGAUCGAAUCGAGAG__AGGCUCC .....................(((((.(((((((((((.(...((((.......((((.(((((....))))).))))....))))..).)))....)))))))).)))))......... (-22.11 = -22.67 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:26 2006