Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,458,922 – 10,459,016 |
Length | 94 |
Max. P | 0.819901 |
Location | 10,458,922 – 10,459,016 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 92.15 |
Mean single sequence MFE | -36.70 |
Consensus MFE | -27.89 |
Energy contribution | -28.45 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -2.51 |
Structure conservation index | 0.76 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10458922 94 + 22224390 CCACCCCGCCACCCCCAUCGCGUUUCUUUGACCGCAGAGAGAGCGAGCAUGCUCCUGGUUCCAGUUCCAUCAUCUGACGA---UGGGGGUUCGGCAC .......((((((((((((((.((((((((....))))))))))(((....)))(((....)))..............))---)))))))..))).. ( -38.00) >DroSec_CAF1 3355 92 + 1 --ACCCCGCCACCCCCAUCGCGCUACUUUGACCGCAGAGAGAGCGAGCAUGCUCCUGGUUCCAGUUCCAUCAUCUGACGA---UGGGGGUUCGGCAC --.....(((((((((((((((((.(((((....)))))..)))).(.(((...(((....)))...))))......)))---)))))))..))).. ( -36.90) >DroSim_CAF1 3325 94 + 1 CCACCCCGCCACCCCCAUCGCGCUACUUUGACCGCAGAGAGAGCGAGCAUGCUCCUGGUUCCAGUUCCAUCAUCUGACGA---UGGGGGUUCGGCAC .......(((((((((((((((((.(((((....)))))..)))).(.(((...(((....)))...))))......)))---)))))))..))).. ( -36.90) >DroYak_CAF1 3274 95 + 1 UCAGCCAACCACCCCCAUCGCGCUUCUUUGACCGCAGA--GAGCGAGCAGACUCCUGGUUCCAGUUCCAUCAUCUGACGACGUUGGGGGUUCGGCAC ...(((....(((((((.((((((.(((((....))))--))))).(((((....(((........)))...)))).)..)).)))))))..))).. ( -35.00) >consensus CCACCCCGCCACCCCCAUCGCGCUACUUUGACCGCAGAGAGAGCGAGCAUGCUCCUGGUUCCAGUUCCAUCAUCUGACGA___UGGGGGUUCGGCAC .......((((((((((((((.((.(((((....))))))).))))........(((....)))...................)))))))..))).. (-27.89 = -28.45 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:25 2006