Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,457,250 – 10,457,348 |
Length | 98 |
Max. P | 0.997574 |
Location | 10,457,250 – 10,457,348 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 62.93 |
Mean single sequence MFE | -36.30 |
Consensus MFE | -19.65 |
Energy contribution | -21.43 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.04 |
Mean z-score | -2.02 |
Structure conservation index | 0.54 |
SVM decision value | 2.89 |
SVM RNA-class probability | 0.997574 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10457250 98 - 22224390 CAGCUACGCCAAGUCCAAGAAGCAGGAGGCCAAGGCGGCGACAGCGGCACUUAAGGCCAGCGCCGCAGCGGCUGCGGCGGCAGCCGCCUCCUCCGCCC ..(((.(...........).))).(((((...(((((((....(((((.(....))))..((((((((...)))))))))).)))))))))))).... ( -46.60) >DroSec_CAF1 1692 98 - 1 CAGCUACGCCAAGUCCAAGAAGCAGGAGGCCAAGGCGGCGACGGCAGCACUUAAGGCCAGCGCCGCAGCGGCUGCGGCGGCAGCCGCAUCCUCCGCCC ..(((.(...........).))).(((((.....((((((..(((..........)))..)))))).((((((((....))))))))..))))).... ( -46.50) >DroSim_CAF1 1677 94 - 1 CAGCUAC--CUAGUC--AGAGGCAGGAGGCAAAGGCGGCGACGGCGGCACUUANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ..(((.(--((.((.--....))))).))).(((((.((....)).)).))).............................................. ( -15.80) >consensus CAGCUACGCCAAGUCCAAGAAGCAGGAGGCCAAGGCGGCGACGGCGGCACUUAAGGCCAGCGCCGCAGCGGCUGCGGCGGCAGCCGC_UCCUCCGCCC ..(((.(...........).)))....(((((((((.((....)).)).)))..)))).........((((((((....))))))))........... (-19.65 = -21.43 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:23 2006