Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,456,686 – 10,456,806 |
Length | 120 |
Max. P | 0.744390 |
Location | 10,456,686 – 10,456,806 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.83 |
Mean single sequence MFE | -43.10 |
Consensus MFE | -39.78 |
Energy contribution | -39.53 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.18 |
Mean z-score | -1.33 |
Structure conservation index | 0.92 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744390 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10456686 120 + 22224390 ACAGCUUGUGAUCGUGGGCAAUGGAGCACUCGCGGCAGGAUUGAUGCGACCGGAAGGCAAUGUCGUGCUCGUCCUCCUCCUCGACGAAAUUCUGCUCCAUUUUCAUUUCGCGGGCCAGCG ...((((((((..(((((.(((((((((.(((.((.((((.((((((((((....)).....))))).)))...)))))).))).(.....))))))))))))))).))))))))..... ( -43.40) >DroVir_CAF1 1723 120 + 1 ACAGCUUGUGGUCAUGUGAGAUGGAGCACUCGCGGCAGGAUUGCUGCGAUCGGAACGCAAUAUCAUGCUCAUCCUCCUCCUCCACAAAGUUCUGCUCCAUUUUCAUUUCACGCGCCAGCG ...(((.(((((...(((((((((((((.(((((((......)))))))..(((..(((......)))...)))..................))))))).))))))...)).))).))). ( -41.50) >DroPse_CAF1 1096 120 + 1 ACAGCUUGUGGUCGUGCGUGAUGGAGCAUUCGCGGCAGGACUGCUGCGACCGGAAGGCAAUGUCGUGCUCGUCCUCCUCCUCCACGAAGUUCUGCUCCAUCUUCAUCUCGCGAGCCAGCG ...((((((((..(((...(((((((((.((((((((....))))))))((....)).....(((((...............))))).....)))))))))..))).))))))))..... ( -47.36) >DroSec_CAF1 1134 120 + 1 ACAGCUUGUGAUCGUGGGCAAUGGAGCACUCGCGGCAGGAUUGAUGCGACCGGAAGGCAAUGUCGUGCUCGUCCUCCUCUUCGACGAAAUUCUGCUCCAUUUUCAUUUCGCGGGCCAGCG ...((((((((..(((((.(((((((((..((((((((........)(.((....)))..))))))).(((((.........))))).....)))))))))))))).))))))))..... ( -42.80) >DroMoj_CAF1 1221 120 + 1 ACAGCUUGUGAUCAUGCGAGAUGGAGCACUCGCGGCACGACUGCUGCGAUCUGAACGCAAUGUCAUGCUCAUCCUCCUCUUCCACAAAAUUCUGCUCCAGUUUCAUCUCACGCGCUAGCG ..(((.(((((..(((.(((.(((((((.((((((((....)))))))).......(((......)))........................))))))).)))))).))))).))).... ( -35.50) >DroPer_CAF1 1096 120 + 1 ACAGCUUGUGGUCGUGUGUGAUGGAGCAUUCGCGGCAGGACUGCUGCGACCGGAAGGCAAUGUCGUGCUCGUCCUCCUCCUCCACGAAGUUCUGCUCCAUCUUCAUCUCGCGAGCCAGCG ...((((((((..(((...(((((((((.((((((((....))))))))((....)).....(((((...............))))).....)))))))))..))).))))))))..... ( -48.06) >consensus ACAGCUUGUGAUCGUGCGAGAUGGAGCACUCGCGGCAGGACUGCUGCGACCGGAAGGCAAUGUCGUGCUCGUCCUCCUCCUCCACGAAAUUCUGCUCCAUUUUCAUCUCGCGAGCCAGCG ...((((((((..(((...(((((((((.((((((((....))))))))..(((..(((......)))...)))..................)))))))))..))).))))))))..... (-39.78 = -39.53 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:22 2006