Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,447,211 – 10,447,313 |
Length | 102 |
Max. P | 0.829093 |
Location | 10,447,211 – 10,447,313 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.43 |
Mean single sequence MFE | -22.23 |
Consensus MFE | -5.45 |
Energy contribution | -5.33 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.20 |
Mean z-score | -1.84 |
Structure conservation index | 0.25 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829093 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10447211 102 + 22224390 AUAAAAACUAAC-------GUCAUUU-UAUAUAAGAUUGCCAUCU---GUUAGUCGAUAUAAAUAUUUCUAUGAUCGAUCAUUUCGAUAGUGUCGA------UAAGCAUAGCCAG-GCAU ((((((((....-------))..)))-))).......((((.(.(---(((.((((((((...(((....)))(((((.....))))).)))))))------).)))).)....)-))). ( -20.10) >DroSec_CAF1 5774 102 + 1 AUAAAAACUAAC-------GUCAUUU-UAUAUAAGAUUUCCAUCU---GUUAGUCGAUAUAAAUAUUUCCAUGAUCGAUAAUUUCGAUAGGGUCGA------UUAGCAUAGGCUG-UCAU ((((((((....-------))..)))-)))....(((..((...(---((((((((((..........((...(((((.....))))).)))))))------))))))..))..)-)).. ( -22.90) >DroSim_CAF1 5755 102 + 1 AUAAAAACUAAC-------GUCAUUU-UAUAUAAGAUUUCCAUCU---GUUAGUCGAUAUAAAUAUUUCCAUGAUCGAUAAUUUCGAUAGGGUCGA------UUAGCAUAGGCUG-UCAU ((((((((....-------))..)))-)))....(((..((...(---((((((((((..........((...(((((.....))))).)))))))------))))))..))..)-)).. ( -22.90) >DroEre_CAF1 5960 120 + 1 AUCAAAACGAUAUAAUCAAAUCAUUUAUACAAGAUCAUUUCGUUUGUUGUUAGUCGACAUAAAUAUUUCGAUCAUCGAUAAUUUCGAUAAGGGCGAAAUAAGUUAGCAUGGCAAAAUGCU ....((((((.((.(((...............))).)).))))))((((.....)))).....(((((((..((((((.....)))))..)..)))))))....(((((......))))) ( -23.16) >DroYak_CAF1 6378 98 + 1 AGCAAAACGAUG-------AUCAUUU-UACAUGAGACUUUAAUUUG-------UCGAUGUAAAUAUUUCCAUAAUCGAUCACUUCGAUAAGAUCGA------UUAGCAGGGCCAG-UCAU .........(((-------((...((-(((((..(((........)-------)).)))))))....(((.(((((((((..........))))))------)))...)))...)-)))) ( -22.10) >consensus AUAAAAACUAAC_______GUCAUUU_UAUAUAAGAUUUCCAUCU___GUUAGUCGAUAUAAAUAUUUCCAUGAUCGAUAAUUUCGAUAGGGUCGA______UUAGCAUAGCCAG_UCAU .....................................................(((((...............(((((.....)))))...)))))........................ ( -5.45 = -5.33 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:19 2006