Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,161,810 – 1,161,912 |
Length | 102 |
Max. P | 0.732639 |
Location | 1,161,810 – 1,161,912 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 71.30 |
Mean single sequence MFE | -21.78 |
Consensus MFE | -11.64 |
Energy contribution | -12.06 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.13 |
Mean z-score | -1.69 |
Structure conservation index | 0.53 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1161810 102 - 22224390 -------AAACGAGGAGUUCCAUAUAU----AUAGUACAAUACCAUGUAUCUCAGU----AUUUGCUCUGGGUAAUUAUCACAUCAGCUGUGAUAAGAUUCCCCGCCACCUUGCUCU -------....(((((((...((((..----...(((((......)))))....))----))..)))).(((...((((((((.....))))))))....)))..........))). ( -22.10) >DroSec_CAF1 21643 112 - 1 CUCCCCUAAACGAGGAGUUCCAUAUA-UGGUACAGUACUAUGCCAUGUAUCUCAGU----AUUUGCUCUGGGUAAUUAUCACAUCAGCUGUGAUAAGAUUUCCCGCCACCUUGCUCU ..........(((((......(((((-(((((........))))))))))......----.........(((...((((((((.....)))))))).....)))....))))).... ( -28.10) >DroSim_CAF1 17900 108 - 1 CUCCCCUAAACGAGGAGUUCCAUAUACUAGUACAGCA-----CCAUGUAUCUCAGU----AUUUGCUCUGGGUAAUUAUCACAUCAGCUGUGAUAAGAUUUCCCGCCACCUUGCUCU ..........(((((((...((.(((((((((((...-----...)))).)).)))----)).))..))(((...((((((((.....)))))))).....)))....))))).... ( -26.60) >DroEre_CAF1 26330 109 - 1 CUGCCC-AAA---CGAGUUCCAAAUAU----AUCCAUUUAUCCCAUGUACUUCAGUUCUCAUUUGCACUGAGUAUUUAUCACAUCUGAUGUGAUAAGAUUUCCCGCCACCUAGCUCU ......-...---.(((((........----...............(((((.((((.(......).)))))))))(((((((((...)))))))))...............))))). ( -19.10) >DroYak_CAF1 22225 82 - 1 -------------CGAGUUCCAAAUGU----AUCCAUUUGUCCCAUGUACUUCAGU----AUUUGCACUGAGUAUCUAACACAUCUGAUGUGAUAAGAUUUUC-------------- -------------.......((((((.----...))))))......(((((.((((----......)))))))))....(((((...)))))...........-------------- ( -13.00) >consensus CU_CCC_AAACGAGGAGUUCCAUAUAU____AUAGAACUAUCCCAUGUAUCUCAGU____AUUUGCUCUGGGUAAUUAUCACAUCAGCUGUGAUAAGAUUUCCCGCCACCUUGCUCU ..........((.((((((............................((((.(((............))))))).((((((((.....)))))))))))))).))............ (-11.64 = -12.06 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:20 2006