Locus 3899

Sequence ID X_DroMel_CAF1
Location 10,440,824 – 10,440,919
Length 95
Max. P 0.624913
window6399

overview

Window 9

Location 10,440,824 – 10,440,919
Length 95
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 88.04
Mean single sequence MFE -28.76
Consensus MFE -21.68
Energy contribution -22.76
Covariance contribution 1.08
Combinations/Pair 1.09
Mean z-score -1.64
Structure conservation index 0.75
SVM decision value 0.19
SVM RNA-class probability 0.624913
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10440824 95 + 22224390
AUAG--CUCCAAUCUUGACCUACGCGCGCCUUUCCCCCACACAAGCCGUCGAGAAUUCUCGGAACGGAGAAACCGGUGGGCAAUCCGAUGGAACCAC
....--.((((.(((((.(((((.((.(..(((((.....((.....))((((....))))....)))))..)))))))))))...))))))..... ( -22.00)
>DroSec_CAF1 89517 97 + 1
AUAGCGCUCCAAUCUUGGGUUAAGCGCGCUCUUUCCCCACACAAACCGUCGAGAAUUCUCGAGACGGAGAAACCGGUGGCCAAUCCGCUGGAACUAC
......((((.....((((..(((......)))..)))).........(((((....)))))...))))...(((((((.....)))))))...... ( -30.30)
>DroSim_CAF1 59164 97 + 1
AUAGCGCUCCAAUCUUGGGUUAAGCGCGCUCUUUCCCCACACAAACCGUCGAGAAUUCUCGAAACGGAGAAACCGGUGGCCAAUCCGCUGGAACCAC
......((((.....((((..(((......)))..)))).........(((((....)))))...))))...(((((((.....)))))))...... ( -30.30)
>DroEre_CAF1 91487 97 + 1
CCAGCGUUCCAAUCUUGGCUAAACCGCGCUUUUCCCCCACACAAGCCGUCGAGAAUUCUCGAAACGGAGAAACCGGUGGCCAAUCCGCUGGACCCAC
((((((........((((((..((((.(.((((((.............(((((....)))))...)))))).)))))))))))..))))))...... ( -31.19)
>DroYak_CAF1 86031 97 + 1
CUAGCGAUCCAAUCCUGGCCAAACCGCGCUUUUACCCCACACAAGCCGUCGAGAAUUCUCGAAACGGAGAAACCGGUGGCCAAUUCGCUGGAUCCAC
(((((((........((((((...((.((((...........))))))(((((....)))))..(((.....))).))))))..)))))))...... ( -30.00)
>consensus
AUAGCGCUCCAAUCUUGGCUUAAGCGCGCUUUUCCCCCACACAAGCCGUCGAGAAUUCUCGAAACGGAGAAACCGGUGGCCAAUCCGCUGGAACCAC
...((((((((....)))....)))))..................((((((((....)))))..))).....(((((((.....)))))))...... (-21.68 = -22.76 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:14 2006