Locus 3898

Sequence ID X_DroMel_CAF1
Location 10,438,664 – 10,438,778
Length 114
Max. P 0.527099
window6398

overview

Window 8

Location 10,438,664 – 10,438,778
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.47
Mean single sequence MFE -31.03
Consensus MFE -22.02
Energy contribution -24.15
Covariance contribution 2.13
Combinations/Pair 1.16
Mean z-score -1.44
Structure conservation index 0.71
SVM decision value -0.01
SVM RNA-class probability 0.527099
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10438664 114 - 22224390
UAACAAC---AUCGAAUAUUACAGCUAAAAGCAAUCUGCCAACACCCACUGCGGC---UCCAAUGGUACGAAUACACCAGCCGGGACUGAAAAGCGCUUGGGAUGGCAAAAGCAAUAGCG
.......---.............((((...((....(((((...((((..(((..---(((..((((........))))....)))((....))))).)))).)))))...))..)))). ( -29.40)
>DroSec_CAF1 87450 117 - 1
UAACAACACCAUCGAAUAUUACUGCUAAAAGCAAUCUGCCAACACCCACUGCAGC---UCCUAUGGUACAAAUACACCAGCCGGGAUUGAAAUGCGCUUGGGAUGGCAAGAGCAAUAGCG
.......................((((...((..(((((((...((((.((((.(---((((.((((........))))...))))..)...))))..)))).)))).)))))..)))). ( -28.30)
>DroEre_CAF1 89334 117 - 1
UAAUACC---AUCGAAUAUUACAGCUAACAGCAGUCAGCCAACAGCCACUGCAGCUCCUCCUAUGGUUCGAAUACACCAGCCGGGACUGAAAAGCGGUUGGGAAGGCAGGAGCAAUAGUU
.......---............(((((...(((((..((.....)).))))).(((((((((...((......)).(((((((...((....)))))))))..))).))))))..))))) ( -36.40)
>DroYak_CAF1 83860 114 - 1
UAAUACC---AUCGAAUAUCACAGCUAACAGCAAUUUGCCAACAGCCCCAGCGGC---UCCUAUGGUUCGAAUACACCAGCCGGGACUGAAAAGCGGUUGGGAUGGCAGGAGCAUAAGCU
.....((---.............((.....))....(((((.....((((((.((---((((.((((........))))...)))).......)).)))))).)))))))(((....))) ( -30.01)
>consensus
UAACAAC___AUCGAAUAUUACAGCUAAAAGCAAUCUGCCAACACCCACUGCAGC___UCCUAUGGUACGAAUACACCAGCCGGGACUGAAAAGCGCUUGGGAUGGCAAGAGCAAUAGCG
.......................((((...((..(((((((.(((((.((.(((....((((.((((........))))...)))))))...)).)))))...))))))).))..)))). (-22.02 = -24.15 +   2.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:13 2006