Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,417,803 – 10,417,908 |
Length | 105 |
Max. P | 0.661713 |
Location | 10,417,803 – 10,417,908 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 82.51 |
Mean single sequence MFE | -23.42 |
Consensus MFE | -15.35 |
Energy contribution | -16.80 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.14 |
Mean z-score | -2.06 |
Structure conservation index | 0.66 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661713 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10417803 105 + 22224390 UCAAUGAUGGACAGACAGUUGUAUGCUAAAUAUGAUUGAUAUUCACACAAAGAGAGAUCUCUCGAGAGCUGGUCGUGAUUUCUAUGACCAGAGAUCAUACA-AAAA ....((.((((....((((..(((.....)))..))))...))))))....((((....))))((...(((((((((.....)))))))))...)).....-.... ( -26.20) >DroSec_CAF1 66036 105 + 1 UCAAUGAUGGACAGACAGUUGUAUGCUAAAUAUGAUUGAUAUCCACACAAAGAGAGAUCUCUCGAAAGCAGGUCGUGAUUUCUAUGCCCAGAGAUCAUACA-AAAA ....((.((((....((((..(((.....)))..))))...))))))........(((((..(....).)))))(((((((((......)))))))))...-.... ( -24.70) >DroSim_CAF1 43321 105 + 1 UCAAUGAUGGACAGACAGUUGUAUGCUAAAUAUGAUUGAUAUCCACACAAAGAGAGAUCUCUCGAAAGCAGGUCGUGAUUUCUAUGCCCAGAGAUCAUACA-AAAA ....((.((((....((((..(((.....)))..))))...))))))........(((((..(....).)))))(((((((((......)))))))))...-.... ( -24.70) >DroEre_CAF1 67438 105 + 1 UCAGUGAUGGACAGACAGUUGUAUGCUAAAUAUGAUUGAUAUCCACACAAAGAGAGAUCUCUCGAGAGCAGGUCAUGAUUUCUAUGCCCAGAGAUCAUCAA-AAAA ...(((.((((....((((..(((.....)))..))))...))))))).......(((((((....)).)))))(((((((((......)))))))))...-.... ( -27.30) >DroYak_CAF1 62558 106 + 1 CCAAUGAUGGACAGACAGUUGUAUGCUAAAUAUGAUUGAUAUCCGCACAAAGCGAGAUCUCUCGAGAGCAGCUCAUGAUUUCUAUGUCCAGAGAUCAUGAAAAAAA ........(((....((((..(((.....)))..))))...)))((......((((....))))......))(((((((((((......)))))))))))...... ( -28.40) >DroAna_CAF1 59397 83 + 1 CCAAUGAUAGACUGACAGUUUUAUGCCAAAUAUGAUUGAUACAAAUACAAUAAGAAAU-----------------UGAUUUC------AAAAGAUCAAAUCAAAAU ....((((.......(((((.(((.....))).)))))...................(-----------------(((((..------....)))))))))).... ( -9.20) >consensus UCAAUGAUGGACAGACAGUUGUAUGCUAAAUAUGAUUGAUAUCCACACAAAGAGAGAUCUCUCGAGAGCAGGUCGUGAUUUCUAUGCCCAGAGAUCAUACA_AAAA ....((.((((....(((((((((.....)))))))))...))))))....((((....))))...........(((((((((......)))))))))........ (-15.35 = -16.80 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:12 2006