Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,413,264 – 10,413,354 |
Length | 90 |
Max. P | 0.885752 |
Location | 10,413,264 – 10,413,354 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 65.24 |
Mean single sequence MFE | -18.74 |
Consensus MFE | -7.46 |
Energy contribution | -7.98 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.38 |
Mean z-score | -2.06 |
Structure conservation index | 0.40 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10413264 90 + 22224390 CCUUCCAGCUUAAUAGCCGGAAAUUAAAUCAAGAUUUGCGGGCUCA----------ACUUUUGGGUAUGCCAGCAAAAGAUAAAACA-AAAAAUAAG------ACGA ..((((.(((....))).))))............(((((.(((...----------(((....)))..))).)))))..........-.........------.... ( -18.50) >DroSim_CAF1 36962 91 + 1 CAUUCCAGCUUAAUAGCCGGAAAUUAAAUCAAGAUUUGCGGGCUCA----------ACUUUUGGGUAUGCCAGCAAAAGAUAAAACACAAAAAUAAG------AAGC ..((((.(((....))).))))............(((((.(((...----------(((....)))..))).)))))....................------.... ( -18.70) >DroEre_CAF1 60386 87 + 1 CAUUCCAGCUUAAUAGCCGGAAAUUAAAUCAAGAUUUGCGGGCUCA----------ACUUUUGGGUAUGCAACCAAAAAA---AGCG-AAAAAUAGG------AAGA ..((((..........(((.(((((.......))))).)))(((..----------..((((((........))))))..---))).-.......))------)).. ( -19.20) >DroWil_CAF1 51258 78 + 1 ACUUCAAGCUUAAUAGCCGGAAAUUAAAUCAAGAUUUGUGAG-----------------------AAUGGAA----AAAAGCAAGCG-AAAAGGACCAAAGU-CCGU .......((((.....(((.....(((((....)))))....-----------------------..)))..----..)))).....-....((((....))-)).. ( -12.50) >DroMoj_CAF1 62086 98 + 1 CAUUUAAGCUUAAUAGUCGGAAAUUAAAUCAAGAUUUGCGUGCUUCGGGCCAAAAAACCG--GAGAGCGCAAAGAAA------AGCG-GAAACAGAAAAAGUGAAAU (((((..((((..((((.....))))........(((((((.((((((.........)))--))).)))))))...)------)))(-....).....))))).... ( -24.80) >consensus CAUUCCAGCUUAAUAGCCGGAAAUUAAAUCAAGAUUUGCGGGCUCA__________ACUUUUGGGUAUGCAAGCAAAAAA__AAGCG_AAAAAUAAG______AAGA ..((((.(((....))).)))).............(((((..((((...............))))..)))))................................... ( -7.46 = -7.98 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:11 2006